View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_307 (Length: 227)
Name: NF6868A_low_307
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_307 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21706219 - 21705994
Alignment:
| Q |
1 |
gcaaaatagaacatacttcattttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctt |
100 |
Q |
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| T |
21706219 |
gcaaaatagaacatacttcattttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagcctt |
21706120 |
T |
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| Q |
101 |
taaagagttagatggccactttgcaagacagtattcgggacatatcccaatgaaattgtcaagtaaaaggagattgagtactttcagttgaggaagcatg |
200 |
Q |
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| T |
21706119 |
taaagagtgagatggccactttgcaagacagtattcgggacatatcccaat-aaattgtgaaggaattcgagattgagtactttcagttgaggaagcatg |
21706021 |
T |
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| Q |
201 |
atgtggttgtggtatttgtgagaagaa |
227 |
Q |
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| T |
21706020 |
atgtggttgtggtatttgtgagaagaa |
21705994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 21713334 - 21713533
Alignment:
| Q |
24 |
tgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagttagatggccactttg |
123 |
Q |
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| T |
21713334 |
tgactatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcg |
21713433 |
T |
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| Q |
124 |
caagacagtattcgggacatatcccaatgaaattgtcaagtaaaaggagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgtgaga |
223 |
Q |
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| T |
21713434 |
catgacagtattcaggacacatcccaatgagattgtcaagagaactgagtttgagaacttccagttgagaaagcatggtgtggttcaggtattggtgaga |
21713533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 21709144 - 21709088
Alignment:
| Q |
23 |
ttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggaca |
79 |
Q |
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| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca |
21709088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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