View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_308 (Length: 227)
Name: NF6868A_low_308
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_308 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 30274944 - 30275057
Alignment:
| Q |
20 |
aataaaattacattttatatgagttgagtttggactttacaatgttgtagcatatattacgcaccacctagaaaatctttataagatgagtcacataatt |
119 |
Q |
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| T |
30274944 |
aataaaattacattttatatgagttgagtttggactttacaatgttgtagcatatattacgcaccacctagaaaatctttataagatgagtcacataatt |
30275043 |
T |
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| Q |
120 |
aataattgaaccaa |
133 |
Q |
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| T |
30275044 |
aataattgaaccaa |
30275057 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 30275152 - 30275192
Alignment:
| Q |
186 |
gaatatagttctacaattatttaactccttttaatcttttg |
226 |
Q |
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| T |
30275152 |
gaatatagttctacaattatttaactccttttaatcttttg |
30275192 |
T |
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