View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_309 (Length: 227)
Name: NF6868A_low_309
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_309 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34956184 - 34956410
Alignment:
| Q |
1 |
atactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatgttcaa |
100 |
Q |
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| T |
34956184 |
atactctgaagggaaagacgccaatatattctccattgtctgcagcagagacacttcatatcaggcatgttgtactctaatggtaaacagtgatgttcaa |
34956283 |
T |
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| Q |
101 |
ttatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtatcacga |
200 |
Q |
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| T |
34956284 |
ttatacttaaaagcataaacacttcaaagtaaaatgatacaaatcatgctaatttaaattaaatataatgtgtaccttaacaaggctatctgtatcacga |
34956383 |
T |
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| Q |
201 |
tctccataataagactcatgctcatga |
227 |
Q |
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| T |
34956384 |
tctccataataagactcatgctcatga |
34956410 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 31391094 - 31391025
Alignment:
| Q |
156 |
aaattaaatataatgtgtaccttaacaaggctatctgtatcacgatctccataataagactcatgctcatga |
227 |
Q |
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||||||||||| |||| ||||| || ||||| ||||||||||| ||||||||||| |||||||| |||||| |
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| T |
31391094 |
aaattaaatat--tgtgaaccttgactaggctttctgtatcacggtctccataataggactcatgttcatga |
31391025 |
T |
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