View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_31 (Length: 421)

Name: NF6868A_low_31
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_31
NF6868A_low_31
[»] chr2 (3 HSPs)
chr2 (114-417)||(14953395-14953698)
chr2 (1-84)||(14953280-14953363)
chr2 (1-64)||(40833270-40833332)
[»] chr7 (2 HSPs)
chr7 (114-417)||(4561422-4561725)
chr7 (1-84)||(4561762-4561845)
[»] chr8 (2 HSPs)
chr8 (114-417)||(5370525-5370828)
chr8 (1-84)||(5370409-5370492)
[»] chr3 (2 HSPs)
chr3 (1-68)||(46697191-46697258)
chr3 (219-256)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (1-62)||(23885853-23885914)
[»] chr4 (1 HSPs)
chr4 (1-65)||(56398469-56398532)
[»] chr1 (1 HSPs)
chr1 (1-70)||(6284581-6284650)
[»] chr5 (1 HSPs)
chr5 (5-37)||(37606037-37606069)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 114 - 417
Target Start/End: Original strand, 14953395 - 14953698
Alignment:
Q  114 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14953395 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 14953494  T
Q  214 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  14953495 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcactg 14953594  T
Q  314 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaacac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  14953595 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 14953694  T
Q  414 caaa 417  Q
    ||||    
T  14953695 caaa 14953698  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14953280 - 14953363
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 84  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953280 tcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 14953363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40833332 - 40833270
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatac 64  Q
    ||||| |||||| |||||| |||||||||| | |||| ||||||| ||||||||||||||||||    
T  40833332 tcaaattacaaa-acaaatttgacaccaaatattgttgaccgtatgtttatacggtatttatac 40833270  T

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Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 4561725 - 4561422
Alignment:
Q  114 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  4561725 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 4561626  T
Q  214 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  4561625 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccacttctgcaaacgacctgcaactctcagattcagatcaccg 4561526  T
Q  314 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaacac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  4561525 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 4561426  T
Q  414 caaa 417  Q
    ||||    
T  4561425 caaa 4561422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4561845 - 4561762
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 84  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561845 tcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 4561762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 114 - 417
Target Start/End: Original strand, 5370525 - 5370828
Alignment:
Q  114 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  5370525 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 5370624  T
Q  214 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||      
T  5370625 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttcctcttctgcaaacgacctgcaactctcagattctgatcactg 5370724  T
Q  314 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaacac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  5370725 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 5370824  T
Q  414 caaa 417  Q
    ||||    
T  5370825 caaa 5370828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 5370409 - 5370492
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 84  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5370409 tcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatatatcagtgttccttcttcttc 5370492  T

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Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 46697258 - 46697191
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatca 68  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46697258 tcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatca 46697191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 46697047 - 46697010
Alignment:
Q  219 tcttctccgatcagcttagatctgaccaccaccaacaa 256  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46697047 tcttctccgatcagctcagatctgaccaccaccaacaa 46697010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23885853 - 23885914
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttat 62  Q
    |||||||||||||||||||  |||| ||||||||||| || |||||||||||| ||||||||    
T  23885853 tcaaaatacaaacacaaattagacatcaaacactgtttacagtatatttatacagtatttat 23885914  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 56398532 - 56398469
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca 65  Q
    |||||||||||||||||||  |||| ||||||||||||| |||||| |||||| |||||| ||||    
T  56398532 tcaaaatacaaacacaaattagacatcaaacactgttcatcgtata-ttatacagtatttgtaca 56398469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 6284581 - 6284650
Alignment:
Q  1 tcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt 70  Q
    |||||||||||||||||||  |||| |||||| | ||||  |||| ||||||||||||| ||| ||||||    
T  6284581 tcaaaatacaaacacaaattagacatcaaacattattcatagtatctttatacggtattcatatatcagt 6284650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 37606069 - 37606037
Alignment:
Q  5 aatacaaacacaaatatgacaccaaacactgtt 37  Q
    |||||||||||||||||||||||| ||||||||    
T  37606069 aatacaaacacaaatatgacaccatacactgtt 37606037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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