View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_315 (Length: 225)

Name: NF6868A_low_315
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_315
NF6868A_low_315
[»] chr5 (3 HSPs)
chr5 (18-202)||(7154357-7154541)
chr5 (22-194)||(7141591-7141763)
chr5 (25-185)||(7131870-7132030)
[»] chr3 (4 HSPs)
chr3 (124-194)||(22986277-22986347)
chr3 (146-196)||(22971949-22971999)
chr3 (157-202)||(22941537-22941582)
chr3 (146-194)||(22946404-22946452)
[»] chr1 (3 HSPs)
chr1 (153-196)||(12636999-12637042)
chr1 (153-196)||(12609903-12609946)
chr1 (154-196)||(15885922-15885964)
[»] scaffold0554 (1 HSPs)
scaffold0554 (162-196)||(6722-6756)
[»] chr4 (1 HSPs)
chr4 (21-89)||(55954999-55955067)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 7154357 - 7154541
Alignment:
Q  18 catcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7154357 catcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttc 7154456  T
Q  118 attccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaataatgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7154457 attccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgt 7154541  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 7141591 - 7141763
Alignment:
Q  22 atagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattc 121  Q
    |||||||| ||||| |||||||||||||||| |||  | |||||||| |||||| | | |||||||||  ||||||||| ||||||||||| ||| ||||    
T  7141591 atagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattc 7141690  T
Q  122 cagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag 194  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||    
T  7141691 cagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaag 7141763  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 7131870 - 7132030
Alignment:
Q  25 gatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattccag 124  Q
    ||||||||||| ||||||||||| |||||||| ||||| |||| ||||||  ||||||| ||||| |||||||||||||||||||||||||| | |||||    
T  7131870 gatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttaatccag 7131969  T
Q  125 agaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttgg 185  Q
    |||| ||||| |||||||  |||||||| | ||| ||||||||||| ||| ||||||||||    
T  7131970 agagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttgg 7132030  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 22986347 - 22986277
Alignment:
Q  124 gagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag 194  Q
    |||||||||  || |||||  |||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  22986347 gagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag 22986277  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 22971999 - 22971949
Alignment:
Q  146 ttgatttcaaaggaaataattttgagtatattccttttggtgctggaagaa 196  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||||||||    
T  22971999 ttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaa 22971949  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 22941537 - 22941582
Alignment:
Q  157 ggaaataattttgagtatattccttttggtgctggaagaataatgt 202  Q
    ||||||||||||||||  ||||| |||||||||||||||| |||||    
T  22941537 ggaaataattttgagttcattccatttggtgctggaagaagaatgt 22941582  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 22946452 - 22946404
Alignment:
Q  146 ttgatttcaaaggaaataattttgagtatattccttttggtgctggaag 194  Q
    |||||||||||||||  ||||||||||| ||||| |||||||| |||||    
T  22946452 ttgatttcaaaggaacaaattttgagtacattccatttggtgccggaag 22946404  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 12637042 - 12636999
Alignment:
Q  153 caaaggaaataattttgagtatattccttttggtgctggaagaa 196  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  12637042 caaaggaaataattttgagtacattccttttggtgcaggaagaa 12636999  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 12609946 - 12609903
Alignment:
Q  153 caaaggaaataattttgagtatattccttttggtgctggaagaa 196  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||    
T  12609946 caaagggaataattttgagtacattccctttggtgctggaagaa 12609903  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 15885922 - 15885964
Alignment:
Q  154 aaaggaaataattttgagtatattccttttggtgctggaagaa 196  Q
    ||||| |||||||||||||| |||||||||||| |||||||||    
T  15885922 aaagggaataattttgagtacattccttttggttctggaagaa 15885964  T

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Target: scaffold0554 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 6722 - 6756
Alignment:
Q  162 taattttgagtatattccttttggtgctggaagaa 196  Q
    |||||||||||| ||||||||||||||||||||||    
T  6722 taattttgagtacattccttttggtgctggaagaa 6756  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 55955067 - 55954999
Alignment:
Q  21 catagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatcc 89  Q
    ||||||||| ||||||||||||| ||| ||||  |||||  |||||||||||||| | | |||||||||    
T  55955067 catagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcc 55954999  T

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