View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_316 (Length: 225)
Name: NF6868A_low_316
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_316 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28182878 - 28182654
Alignment:
| Q |
1 |
ataagattgatttatttatacaacaggagttccaagttttgtttcaaatgaaaataatcaaccatggaacagtaacttgtaagatcaaaagatggattag |
100 |
Q |
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| T |
28182878 |
ataagattgatttatttatacaacaggagttccaagttttgtttcaaatgaaaataatcaaccatggaacagtaacttgtaagatcaaaagatggattag |
28182779 |
T |
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| Q |
101 |
aatctctggaaagtcatgatatatatatttgtgagttacttcctgactcctcaattgcatgtagcaccaaaacagttgcagccaagacctccaaatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28182778 |
aatctctggaaagtcatgatatatatatttgtgagttacttcctgactcctcaattgcatgtagcaccaaaacagttgcagccaagacctccaaatgatg |
28182679 |
T |
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| Q |
201 |
aatgatgccaacctctctacaacga |
225 |
Q |
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| T |
28182678 |
aatgatgccaacctctctacaacga |
28182654 |
T |
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