View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_318 (Length: 224)
Name: NF6868A_low_318
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_318 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 34690944 - 34690822
Alignment:
| Q |
96 |
ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34690944 |
ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt |
34690845 |
T |
|
| Q |
196 |
ctgggctcaaacgatgaagggaa |
218 |
Q |
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| T |
34690844 |
ctgggctcaaacgatgaagggaa |
34690822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 34691038 - 34691008
Alignment:
| Q |
1 |
gtctcatgctctatgacagtaagttacaatg |
31 |
Q |
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| T |
34691038 |
gtctcatgctctatgacagtaagttacaatg |
34691008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 26988868 - 26988746
Alignment:
| Q |
96 |
ttctaataaatactaataatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt |
195 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26988868 |
ttctaataaatactaattatgacaattacgaaaagaaaaggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttctt |
26988769 |
T |
|
| Q |
196 |
ctgggctcaaacgatgaagggaa |
218 |
Q |
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| T |
26988768 |
ctgggctcaaacgatgaagggaa |
26988746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 27076447 - 27076513
Alignment:
| Q |
152 |
attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa |
218 |
Q |
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| T |
27076447 |
attaccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaa |
27076513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 21432896 - 21432814
Alignment:
| Q |
135 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa |
218 |
Q |
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| T |
21432896 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagggaa |
21432814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 27028130 - 27028074
Alignment:
| Q |
152 |
attaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacg |
208 |
Q |
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| T |
27028130 |
attaccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacg |
27028074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 27099551 - 27099615
Alignment:
| Q |
154 |
taccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaa |
218 |
Q |
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||||||||||||||||||||| |||||| || |||||||||| |||| ||||| ||||||||||| |
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| T |
27099551 |
taccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaa |
27099615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 27151687 - 27151628
Alignment:
| Q |
158 |
ttctagagaatctgtatgggtttttaaatgcatttcttct-gggctcaaacgatgaaggg |
216 |
Q |
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||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
27151687 |
ttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaatgatgaaggg |
27151628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26988963 - 26988933
Alignment:
| Q |
1 |
gtctcatgctctatgacagtaagttacaatg |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
26988963 |
gtctcatgctctatgacagtaagttacaatg |
26988933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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