View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_323 (Length: 222)
Name: NF6868A_low_323
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_323 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42256902 - 42257123
Alignment:
| Q |
1 |
tcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgatacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42256902 |
tcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatggatggaaccattcaactctttataaaagggtatggtttgatacct |
42257001 |
T |
|
| Q |
101 |
tatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatatgtcttggggcatatgc |
200 |
Q |
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||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42257002 |
tataactattcatgaaagaattgatagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatatgtcttggggcatatgc |
42257101 |
T |
|
| Q |
201 |
aaaagataattccatattatca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
42257102 |
aaaagataattccatattatca |
42257123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22382217 - 22381996
Alignment:
| Q |
1 |
tcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgatacct |
100 |
Q |
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||||| ||||||||||||||||||||| |||||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
22382217 |
tcacatggtaggtgtacttgaataatgtagcctatagttaaatgaatccatgatgggttgaaccattcaactctttatgaaagggtatagtttgatacct |
22382118 |
T |
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| Q |
101 |
tatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatatgtcttggggcatatgc |
200 |
Q |
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| T |
22382117 |
tatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccattttctctataaatatgtcttggggcatatgc |
22382018 |
T |
|
| Q |
201 |
aaaagataattccatattatca |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
22382017 |
aaaagataattccatattatca |
22381996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 40887599 - 40887400
Alignment:
| Q |
9 |
taggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgataccttatgacta |
108 |
Q |
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|||||| |||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||||||||||||||||| |
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| T |
40887599 |
taggtgcacttaaataatgtagcctatagttgaatgaatccatgatggatggaaccattcaactcattgtgaaaggatatggtttgataccttatgacta |
40887500 |
T |
|
| Q |
109 |
ttcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctct-ataaatatgtcttggggcatatgcaaaagat |
207 |
Q |
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||||| |||||||||||||| || |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
40887499 |
ttcatgaaagaattggtagaaccgttgtaaccctacatgaaaaggtaggtctcctctccactttctctaataaatatgtcttggggcatatgcagaagat |
40887400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 17481702 - 17481523
Alignment:
| Q |
1 |
tcacacggtaggtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgatacct |
100 |
Q |
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||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
17481702 |
tcacatggtaggtgtacttgaataatgtagcctatagttgaatgaatccatgatgggtggaaccattcaactctttatgaaagggtatcgtttgatacct |
17481603 |
T |
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| Q |
101 |
tatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataa |
180 |
Q |
| |
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| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17481602 |
tgtgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctccactttctctataa |
17481523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 17480735 - 17480694
Alignment:
| Q |
178 |
taaatatgtcttggggcatatgcaaaagataattccatattat |
220 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| |
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| T |
17480735 |
taaatatgtcttggggcatatgcaaaagatta-tccatattat |
17480694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 39905889 - 39906044
Alignment:
| Q |
67 |
tcaactctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctc |
166 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39905889 |
tcaactctttatgaaagggtatggtttgataccttatggctattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcccctctc |
39905988 |
T |
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| Q |
167 |
cactttctctataaatatgtcttggggcatatgcaaaagataattccatattatca |
222 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39905989 |
cattttctctataaatatgtcttggggcatatgcaaaagataattctatattatca |
39906044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 25019936 - 25019777
Alignment:
| Q |
61 |
aaccattcaactctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcc |
160 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25019936 |
aaccattcaactctgtatgaaagggtatggtttgataccttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggtaggtcc |
25019837 |
T |
|
| Q |
161 |
cctctccactttctctataaatatgtcttggggcatatgcaaaagataattccatattat |
220 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
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|
| T |
25019836 |
cctctccactttctctataaatatgtcttggggattatgcaaaagacaattccatgttat |
25019777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 54903867 - 54903811
Alignment:
| Q |
65 |
attcaactctttataaaagggtatggtttgataccttatgactattcataaaagaat |
121 |
Q |
| |
|
|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
54903867 |
attcaactttttacaaaaaggtatggtttggtaccttatgactattcataaaagaat |
54903811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 14077573 - 14077673
Alignment:
| Q |
12 |
gtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgataccttatgactattc |
111 |
Q |
| |
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|||| ||||||| ||| | | ||||||| |||||||| |||||| | |||||||||||| || || |||||||||||||||||||||||||||||||| |
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|
| T |
14077573 |
gtgtgcttgaatcatgtaacttataattaaatgaatctatgatgggttaaaccattcaacttttcatgaaagggtatggtttgataccttatgactattc |
14077672 |
T |
|
| Q |
112 |
a |
112 |
Q |
| |
|
| |
|
|
| T |
14077673 |
a |
14077673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 36931684 - 36931767
Alignment:
| Q |
101 |
tatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctctccactttctctataaatat |
184 |
Q |
| |
|
||||||||| ||||||| | |||||||| ||||| | || |||||||||||||||| ||||| ||||||||| |||||||| |
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| T |
36931684 |
tatgactatacataaaatagttggtagaaccatttttactctacatgaaagggtagacatcctctacactttctcaataaatat |
36931767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 8939128 - 8939207
Alignment:
| Q |
32 |
ctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgataccttatgactattca |
112 |
Q |
| |
|
||||| || |||||||||||||| |||| ||||||||||||||| |||||||||||| ||| ||| |||||||||||||| |
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| T |
8939128 |
ctatagttaaatgaatccatgataaatg-aaccattcaactcttcgtaaaagggtatgattttatatcttatgactattca |
8939207 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 21389 - 21274
Alignment:
| Q |
60 |
gaaccattcaactctttataaaagggtatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtc |
159 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||| |||||||| ||| ||||||| || ||||| ||| | |||||||| ||||||||||| ||| |
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|
| T |
21389 |
gaaccattcaactcttcaagaaagagtatggtttagtaccttataact----ttaaaagatttagtagaaccactataaccctatatgaaagggtatgtc |
21294 |
T |
|
| Q |
160 |
ccctctccactttctctata |
179 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
21293 |
ctctctccactttctctata |
21274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 48228924 - 48228839
Alignment:
| Q |
12 |
gtgtacttgaataatgcagcctataattgaatgaatccatgatgaatggaaccattcaactctttataaaagggtatggtttgatac |
98 |
Q |
| |
|
|||| ||||||||||| ||| |||| || ||||||| ||||||| ||| |||||||||||| ||||| ||||| ||| ||||||||| |
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| T |
48228924 |
gtgtgcttgaataatgaagcatatagttaaatgaattcatgatggatg-aaccattcaactttttatgaaaggttatagtttgatac |
48228839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 48228824 - 48228776
Alignment:
| Q |
136 |
taaccctacatgaaagggtaggtcccctctccactttctctataaatat |
184 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
48228824 |
taaccttacataaaaggataggttccctctccactttctttataaatat |
48228776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 46631459 - 46631538
Alignment:
| Q |
86 |
tatggtttgataccttatgactattcataaaagaattggtagagccattgtaaccctacatgaaagggtaggtcccctct |
165 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |||| |||||||| ||| ||||| |
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|
| T |
46631459 |
tatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggtaagtctcctct |
46631538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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