View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_339 (Length: 215)
Name: NF6868A_low_339
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_339 |
 | |
|
| [»] scaffold0896 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 7140536 - 7140355
Alignment:
| Q |
16 |
agtacgaatcgatgtcagaaaagttcaacatcttcggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7140536 |
agtacgaatcgatgtcagaaaagttcaacatcttcagtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcgtcaacga |
7140437 |
T |
|
| Q |
116 |
acattatttccaaattctttgaatttttcagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatg |
197 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7140436 |
acattatttcaaaattctttgaattttccagcattaacctacttctttttagggtcctttgactttggtgtggacgatgatg |
7140355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 8656449 - 8656270
Alignment:
| Q |
18 |
tacgaatcgatgtcagaaaagttcaacatcttcggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
117 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8656449 |
tacgaatcgatgtcaaaaaagttaaacatcttcagtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
8656350 |
T |
|
| Q |
118 |
attatttccaaattctttgaatttttcagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatg |
197 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8656349 |
attatttccaaattctttgaaatttccagcattaacctacttatttttagggtcctttgactttggtgtggacgatgatg |
8656270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 8680112 - 8679970
Alignment:
| Q |
51 |
ggtcttacttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaatttttcagcatt |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
8680112 |
ggtcttacttcttttcatgtgacactttaacatcacttcacatttctgttgcttttcctcaacgaacattatttccaaattctttgaattttccatgatt |
8680013 |
T |
|
| Q |
151 |
aacctacttgtttttagggtcctttgactttggtgtggacgat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8680012 |
aacctacttgtttttagggtcctttgactttggtgtggacgat |
8679970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 7115269 - 7115153
Alignment:
| Q |
72 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaatttttcagcattaacctacttgtttttagggtc |
171 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
7115269 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7115170 |
T |
|
| Q |
172 |
ctttgactttggtgtgg |
188 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
7115169 |
ctttgactttcgtgtgg |
7115153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 7120341 - 7120225
Alignment:
| Q |
72 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaatttttcagcattaacctacttgtttttagggtc |
171 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
7120341 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttatggtc |
7120242 |
T |
|
| Q |
172 |
ctttgactttggtgtgg |
188 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
7120241 |
ctttgactttcgtgtgg |
7120225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 7123745 - 7123629
Alignment:
| Q |
72 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaatttttcagcattaacctacttgtttttagggtc |
171 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||| |||| |||| |||| |
|
|
| T |
7123745 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaactttatttccaaattctttgaattttccagcattaactagtttgtctttacggtc |
7123646 |
T |
|
| Q |
172 |
ctttgactttggtgtgg |
188 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
7123645 |
ctttgactttcgtgtgg |
7123629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 7175144 - 7175036
Alignment:
| Q |
58 |
cttcttttcatgtgacactttaacatctcttcacatttgtgttgcttttcctcaacgaacattatttccaaattctttgaatttttcagcattaacctac |
157 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| | || || | ||||| ||||||||||||||||||| |||||||| |||| |||||| || |
|
|
| T |
7175144 |
cttcttttcatgtcacactttaacatctcttaacctttctttttctgattctcaagaaacattatttccaaattctctgaattttccagctttaaccaac |
7175045 |
T |
|
| Q |
158 |
ttgttttta |
166 |
Q |
| |
|
|||| |||| |
|
|
| T |
7175044 |
ttgtcttta |
7175036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 13492331 - 13492369
Alignment:
| Q |
115 |
aacattatttccaaattctttgaatttttcagcattaac |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13492331 |
aacattatttccaaattctttgaattttccagcattaac |
13492369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 2595 - 2640
Alignment:
| Q |
72 |
acactttaacatctcttcacatttgtgttgcttttcctcaacgaac |
117 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
2595 |
acactttaacatctcttcacgtttctgttgcttctcctcaaagaac |
2640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University