View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_344 (Length: 212)

Name: NF6868A_low_344
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_344
NF6868A_low_344
[»] chr4 (2 HSPs)
chr4 (104-188)||(11592515-11592599)
chr4 (104-188)||(11645520-11645604)
[»] chr5 (2 HSPs)
chr5 (11-85)||(24653580-24653654)
chr5 (27-110)||(24651544-24651626)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 11592599 - 11592515
Alignment:
Q  104 atgagtttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtcta 188  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11592599 atgagtttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtcta 11592515  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 104 - 188
Target Start/End: Original strand, 11645520 - 11645604
Alignment:
Q  104 atgagtttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtcta 188  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11645520 atgagtttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtcta 11645604  T

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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 24653654 - 24653580
Alignment:
Q  11 tggacatcatacattgtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttatt 85  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24653654 tggacatcatacattgtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttatt 24653580  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 24651626 - 24651544
Alignment:
Q  27 tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctatgagtt 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| ||||    
T  24651626 tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctataagtt 24651544  T

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