View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_346 (Length: 211)
Name: NF6868A_low_346
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_346 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 5690122 - 5689923
Alignment:
| Q |
12 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
111 |
Q |
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| T |
5690122 |
atgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
5690023 |
T |
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| Q |
112 |
tggttctggaatatttgaaggtgttaagggtcatgtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
211 |
Q |
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| T |
5690022 |
tggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
5689923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 25914803 - 25914607
Alignment:
| Q |
12 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
111 |
Q |
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| T |
25914803 |
atgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaactgtgactgg |
25914707 |
T |
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| Q |
112 |
tggttctggaatatttgaaggtgttaagggtcatgtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaag |
211 |
Q |
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| T |
25914706 |
tggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaagggtattaag |
25914607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 6792565 - 6792749
Alignment:
| Q |
12 |
atgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgactgg |
111 |
Q |
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|||||||||| || ||||| |||||||||| |||||||| | | || ||||| | |||||||| ||| ||||| |||||| | ||||||||||| |
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| T |
6792565 |
atgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgactgg |
6792664 |
T |
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| Q |
112 |
tggttctggaatatttgaaggtgttaagggtcatgtgaagttgcatcaaattgtttttccattcaagattttctatacattttat |
196 |
Q |
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| T |
6792665 |
tggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttat |
6792749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 6800131 - 6800220
Alignment:
| Q |
107 |
actggtggttctggaatatttgaaggtgttaagggtcatgtgaagttgcatcaaattgtttttccattcaagattttctatacattttat |
196 |
Q |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttat |
6800220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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