View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_348 (Length: 210)
Name: NF6868A_low_348
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_348 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 3006556 - 3006720
Alignment:
| Q |
27 |
atattattcttcataacttgataaa-gaaaccattaattgcttcttatatggccacgagatacgatctccttgtaccttaaacacataactaattgtgct |
125 |
Q |
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| T |
3006556 |
atattattcttcataacttgataaaagaaaccattaattgcttcttatatggccatgagatacgatctccttgtaccttaaacacataactaattgtgct |
3006655 |
T |
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| Q |
126 |
cctcctatcaattttatctccacactagtcaccatcagaatagccctactagattaagttgttca |
190 |
Q |
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| T |
3006656 |
cctcctatcaattttatctccacactagtcaccatcagaatagtcctactagattaagttgttca |
3006720 |
T |
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