View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_35 (Length: 407)
Name: NF6868A_low_35
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 6915471 - 6915730
Alignment:
| Q |
12 |
gttggagcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaa |
111 |
Q |
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| T |
6915471 |
gttggagcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaa |
6915570 |
T |
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| Q |
112 |
attaaggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
211 |
Q |
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| T |
6915571 |
attaaggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtg |
6915670 |
T |
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| Q |
212 |
catccggcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttc |
271 |
Q |
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| T |
6915671 |
catccagcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttc |
6915730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
| Q |
160 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
215 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
48 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
110 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 15040345 - 15040294
Alignment:
| Q |
220 |
gatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttc |
271 |
Q |
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| T |
15040345 |
gatacttttactgatgggtctgttaaatatacaatgacttcaatgagtgttc |
15040294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 35856854 - 35856932
Alignment:
| Q |
166 |
gaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggtta |
244 |
Q |
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| T |
35856854 |
gaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta |
35856932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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