View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_351 (Length: 209)
Name: NF6868A_low_351
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_351 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 48585471 - 48585673
Alignment:
| Q |
1 |
gaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
48585471 |
gaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacat |
48585570 |
T |
|
| Q |
101 |
gaaaatggtttgtttaaatcagcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585571 |
gaaaatggtttgtttaaatcagcatgattcttgatcatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaagg |
48585670 |
T |
|
| Q |
201 |
ctg |
203 |
Q |
| |
|
||| |
|
|
| T |
48585671 |
ctg |
48585673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 48640044 - 48640244
Alignment:
| Q |
1 |
gaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||| |
|
|
| T |
48640044 |
gaaaacagcagcggaattagtccatgacaaaacagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacat |
48640143 |
T |
|
| Q |
101 |
gaaaatggtttgtttaaatcagcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaagg |
200 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| || ||||| |||||| || |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48640144 |
gaaaatggtttgtttgaatcggcatgattctttatcatttgtgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaagg |
48640243 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
48640244 |
c |
48640244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 48661708 - 48661841
Alignment:
| Q |
13 |
ggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttg |
112 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
48661708 |
ggaattagtccataataaagcagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttg |
48661807 |
T |
|
| Q |
113 |
tttaaatcagcatgattcttgataatttgagaaa |
146 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||| |
|
|
| T |
48661808 |
tttgaatcagcatgattcttgatcatttgagaaa |
48661841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 48618107 - 48618046
Alignment:
| Q |
85 |
attgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
48618107 |
attgtttatgatacatgaaaatggtttgtttgaatcagcatgattcttgatcatttgagaaa |
48618046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 48667291 - 48667438
Alignment:
| Q |
1 |
gaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacat |
100 |
Q |
| |
|
|||||||||| |||||||||||| | ||| |||||||||||||||||||| ||| | ||| | ||||||||| |||||||| |||||| |
|
|
| T |
48667291 |
gaaaacagcactagaattagtccataacaaagcagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacat |
48667390 |
T |
|
| Q |
101 |
gaaaatggtttgtttaaatcagcatgattcttgataatttgagaaata |
148 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
48667391 |
gaaattggtttgttcgaatcagcatgattctttatcatttgagaaata |
48667438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 48629010 - 48629155
Alignment:
| Q |
1 |
gaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacat |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||| | |||||| ||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
48629010 |
gaaaacagcactagaattattccatgataaagcagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattgtatatgatacat |
48629109 |
T |
|
| Q |
101 |
gaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa |
146 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||| |||| ||||| |
|
|
| T |
48629110 |
gaaattggtttacttgaatcagcatgattcttgatcattttagaaa |
48629155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 48653285 - 48653409
Alignment:
| Q |
22 |
ccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca |
121 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||||| |||||||| || ||| ||||||| |||||||| |||||||||| | ||| |
|
|
| T |
48653285 |
ccataataaaacagaaggaataccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactca |
48653384 |
T |
|
| Q |
122 |
gcatgattcttgataatttgagaaa |
146 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
48653385 |
gcatgattcttgatcatttgagaaa |
48653409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
| Q |
22 |
ccatgataaaacagaaggaatattgtgttcattagcaacatcccaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca |
121 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||||| |||||||| || ||||||||||||||| |||| |||||||||| | ||| |
|
|
| T |
11547396 |
ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca |
11547495 |
T |
|
| Q |
122 |
gcatgattcttgataatttgaga |
144 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
11547496 |
acatgattcttgatcatttgaga |
11547518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University