View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_358 (Length: 205)

Name: NF6868A_low_358
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_358
NF6868A_low_358
[»] chr4 (1 HSPs)
chr4 (22-198)||(11120372-11120545)
[»] chr5 (6 HSPs)
chr5 (23-112)||(42118998-42119087)
chr5 (22-112)||(42130823-42130910)
chr5 (22-112)||(34230720-34230807)
chr5 (25-112)||(34238775-34238859)
chr5 (22-112)||(42125598-42125685)
chr5 (22-112)||(41711704-41711791)
[»] chr2 (1 HSPs)
chr2 (24-112)||(12250421-12250506)
[»] chr3 (1 HSPs)
chr3 (22-112)||(8525053-8525140)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 11120372 - 11120545
Alignment:
Q  22 cagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatgattgtgttg 121  Q
    |||||||| ||||| ||||||||| |||||||||  ||||| ||| ||||||||  ||||||   |||||||||||||||||||||||||| |  |||||    
T  11120372 cagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatga---gcagcaatcagtcccatttttccatgttgttgttg 11120468  T
Q  122 aaggttcattaccggcgcaagaaccaaaagatgcagaagataacagcgtgaagggggacttgaactgaagcaaagca 198  Q
    ||||||||||||||| |||| || ||||||| | ||||||||| | |||||||| ||||| ||||||||||||||||    
T  11120469 aaggttcattaccggtgcaataatcaaaagaggtagaagataataacgtgaaggaggactcgaactgaagcaaagca 11120545  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 42118998 - 42119087
Alignment:
Q  23 agccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    ||||||||||||| ||||||||||||||||||||| || |||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  42118998 agccaaggttgagaccaatcacgtgaccagagactctgacacacgcgacaccatgccatgatgagcagcaatcagtcccatttttccatg 42119087  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 42130823 - 42130910
Alignment:
Q  22 cagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||| |||  ||   ||||||||||||||||||||||||||||||    
T  42130823 cagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattcc---atgagcagcaatcagtcccatttttccatg 42130910  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 34230807 - 34230720
Alignment:
Q  22 cagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    ||||||||||| || ||||| ||||||||||| || ||||||||| |||||||| |||   ||||||||||||||||||||||||||||||    
T  34230807 cagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgcc---atgagcagcaatcagtcccatttttccatg 34230720  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 34238859 - 34238775
Alignment:
Q  25 ccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    |||||||| || ||||| ||||||||||| || ||||||||| |||||||| |||   ||||||||||||||||||||||||||||||    
T  34238859 ccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgcc---atgagcagcaatcagtcccatttttccatg 34238775  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 42125598 - 42125685
Alignment:
Q  22 cagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    |||||||| ||||| ||||||||||||| || ||  || |||||| ||||||||  ||||||   ||||||||||||||||||||||||||    
T  42125598 cagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattccatga---gcagcaatcagtcccatttttccatg 42125685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 41711791 - 41711704
Alignment:
Q  22 cagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    |||||||||||||| |||| |||| ||||| |||| ||||||||  |||||||  |||   ||||||| ||||||||| ||||||||||||    
T  41711791 cagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggcc---atgagcaacaatcagtctcatttttccatg 41711704  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 12250421 - 12250506
Alignment:
Q  24 gccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    |||||||| ||| |||||||| |||||| ||| |||||||||  |||||||| |||||||   |||||||||||||||||||| |||||    
T  12250421 gccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgccatga---gcagcaatcagtcccattttgccatg 12250506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 8525053 - 8525140
Alignment:
Q  22 cagccaaggttgagtccaatcacgtgaccagagactgtgtcacacttgacaccacgccatgatgagcagcaatcagtcccatttttccatg 112  Q
    |||||||||||||| |||||||||||||||  ||  ||||||||| ||||||||  ||   |||||||||||||| || ||||||||||||    
T  8525053 cagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatccc---atgagcagcaatcaatctcatttttccatg 8525140  T

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