View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_360 (Length: 205)
Name: NF6868A_low_360
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_360 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 35206363 - 35206528
Alignment:
| Q |
24 |
tctttctcctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgttgtatgtttggccagtggaaacagttacaggatct |
123 |
Q |
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| T |
35206363 |
tctttctcctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgttgtatgtttggccagtggaaacagttacaggatct |
35206462 |
T |
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| Q |
124 |
gtcattagttccagagaaatcggacaacggtaatcatccggggttatgtagtttaacatctctgct |
189 |
Q |
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| T |
35206463 |
gtcattagttccagagaaatcggacaacggtaatcatccggtgttatgtagtttaacatctctgct |
35206528 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 43986069 - 43986190
Alignment:
| Q |
31 |
cctgtttttggacatgtcatgtttcctgctttaaaccatttttgaattgaggttctgttgtatgtttggccagtggaaacagttacaggatctgtcatta |
130 |
Q |
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| T |
43986069 |
cctgttttagggcatgttttgtttcctgctttaagccatgtctgaattgaagcacgatcgtaggtttgtcctgttgaaactgttactggatcagtcatta |
43986168 |
T |
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| Q |
131 |
gttccagagaaatcggacaacg |
152 |
Q |
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| T |
43986169 |
gttcgagtgaaattggacaacg |
43986190 |
T |
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