View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_362 (Length: 204)
Name: NF6868A_low_362
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_362 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 33120118 - 33119954
Alignment:
| Q |
18 |
aacaatgaggttagagacccacactgttgttgatgctattcctccatatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
117 |
Q |
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| T |
33120118 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaacc |
33120019 |
T |
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| Q |
118 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctat |
182 |
Q |
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| T |
33120018 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctat |
33119954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 33116906 - 33116784
Alignment:
| Q |
18 |
aacaatgaggttagagacccacactgttgttgatgctattcctccatatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
117 |
Q |
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| T |
33116906 |
aacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaaca |
33116807 |
T |
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| Q |
118 |
gttcccattcctggtgaaaagaa |
140 |
Q |
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| T |
33116806 |
gtccccattccaggtgaaaagaa |
33116784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 21491899 - 21492025
Alignment:
| Q |
25 |
aggttagagacccacactgttgttgatgctattcctccatatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttccca |
124 |
Q |
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| T |
21491899 |
aggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttccca |
21491998 |
T |
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| Q |
125 |
ttcctggtgaaaagaatattatgtaga |
151 |
Q |
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| T |
21491999 |
ttccaggcgagaagaatatgatgtaga |
21492025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
45 |
tgttgatgctattcctccatatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
142 |
Q |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
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