View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_363 (Length: 202)

Name: NF6868A_low_363
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_363
NF6868A_low_363
[»] chr3 (4 HSPs)
chr3 (13-159)||(32224072-32224218)
chr3 (39-133)||(32241379-32241473)
chr3 (13-110)||(32227796-32227893)
chr3 (116-159)||(32227013-32227056)
[»] chr6 (1 HSPs)
chr6 (19-159)||(16257855-16257995)
[»] chr5 (1 HSPs)
chr5 (80-136)||(19969041-19969097)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 32224072 - 32224218
Alignment:
Q  13 atggacatcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatcaagtgcacca 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  32224072 atggacatcatacataacagccataaattggtctactcgagcaatttggttgcataaaatattaagtgaaacatacattgcataattatcaagtgcgcca 32224171  T
Q  113 taaaaatggctaacaattgatttgtatgacgagaccaaacctatatt 159  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  32224172 tagaaatggctaacaattgatttgtatgacgagaccaaacctatatt 32224218  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 32241379 - 32241473
Alignment:
Q  39 attggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatcaagtgcaccataaaaatggctaacaattgat 133  Q
    |||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  32241379 attgttctactcgagcaatttagttacataaaatattaagtgaaacatacattgcataattatcaagtgcaccatagaaatggctgacaattgat 32241473  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 32227893 - 32227796
Alignment:
Q  13 atggacatcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatcaagtgcac 110  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||    
T  32227893 atggacatcatacatagcatccacaaattgttctactcgagcaatttggttacataaaatattaagtgaaacattcattgcatagttatcaagtgcac 32227796  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 32227056 - 32227013
Alignment:
Q  116 aaatggctaacaattgatttgtatgacgagaccaaacctatatt 159  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||    
T  32227056 aaatggctaacaattgatttgtttgaagagatcaaacctatatt 32227013  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 16257855 - 16257995
Alignment:
Q  19 atcatacatagcagccataaattggtctactcgagcaatttggttgcataaaataataagtgaaacatacattgcataattatcaagtgcaccataaaaa 118  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| | |||    
T  16257855 atcatacatagcagccacaaattgttctacttgagcaatttggttacataaaataataagagaaacatacattgcatagttatcaagtgcaccacataaa 16257954  T
Q  119 tggctaacaattgatttgtatgacgagaccaaacctatatt 159  Q
    || ||  || ||||||||||| | |||||||||||||||||    
T  16257955 tgcctggcagttgatttgtattaagagaccaaacctatatt 16257995  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 19969041 - 19969097
Alignment:
Q  80 gaaacatacattgcataattatcaagtgcaccataaaaatggctaacaattgatttg 136  Q
    ||||||||| ||||||| ||||||||||| |||||||| ||||  || |||||||||    
T  19969041 gaaacatactttgcatagttatcaagtgctccataaaattggccgaccattgatttg 19969097  T

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