View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_364 (Length: 202)

Name: NF6868A_low_364
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_364
NF6868A_low_364
[»] chr4 (10 HSPs)
chr4 (1-183)||(8654795-8654977)
chr4 (1-183)||(47541161-47541343)
chr4 (1-183)||(3129704-3129883)
chr4 (1-178)||(7662966-7663143)
chr4 (1-141)||(2631634-2631774)
chr4 (1-141)||(23873240-23873380)
chr4 (1-141)||(55298856-55298996)
chr4 (1-183)||(20675258-20675440)
chr4 (1-141)||(8486745-8486885)
chr4 (3-59)||(49926112-49926168)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-183)||(134576-134758)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-183)||(312403-312585)
scaffold0002 (1-183)||(327857-328039)
[»] chr5 (5 HSPs)
chr5 (1-183)||(10486642-10486824)
chr5 (1-183)||(34481183-34481365)
chr5 (1-108)||(587752-587859)
chr5 (8-49)||(23923092-23923133)
chr5 (2-39)||(27795720-27795757)
[»] chr3 (11 HSPs)
chr3 (1-183)||(49731654-49731836)
chr3 (1-183)||(30167066-30167248)
chr3 (1-141)||(2813264-2813404)
chr3 (1-141)||(29309644-29309784)
chr3 (1-141)||(6176242-6176382)
chr3 (1-115)||(9379333-9379447)
chr3 (1-66)||(23602009-23602074)
chr3 (9-66)||(8943596-8943653)
chr3 (1-58)||(25872955-25873012)
chr3 (1-39)||(48569905-48569943)
chr3 (1-37)||(46248738-46248774)
[»] chr1 (7 HSPs)
chr1 (16-183)||(21528416-21528583)
chr1 (1-183)||(36306020-36306202)
chr1 (1-183)||(37530802-37530984)
chr1 (1-141)||(32353061-32353201)
chr1 (1-141)||(48073195-48073335)
chr1 (1-75)||(48265548-48265622)
chr1 (1-66)||(30970447-30970512)
[»] chr7 (8 HSPs)
chr7 (1-183)||(15653427-15653609)
chr7 (40-183)||(46623968-46624111)
chr7 (1-141)||(13440289-13440429)
chr7 (6-183)||(12378450-12378627)
chr7 (1-123)||(43105547-43105669)
chr7 (1-66)||(45943087-45943152)
chr7 (1-37)||(27723973-27724009)
chr7 (1-65)||(41339761-41339825)
[»] chr8 (5 HSPs)
chr8 (1-183)||(7452588-7452770)
chr8 (1-141)||(16420774-16420914)
chr8 (1-65)||(12134564-12134628)
chr8 (2-48)||(13879344-13879390)
chr8 (2-50)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (3-183)||(45421757-45421938)
chr2 (2-141)||(13550361-13550500)
chr2 (1-141)||(26894376-26894516)
chr2 (1-141)||(26899815-26899955)
chr2 (1-141)||(43627735-43627875)
chr2 (1-90)||(31085452-31085541)
chr2 (1-90)||(33548108-33548197)
chr2 (72-141)||(13550884-13550953)
chr2 (1-49)||(36804148-36804196)
chr2 (1-38)||(36804363-36804400)
chr2 (2-48)||(40176905-40176951)
chr2 (1-49)||(22052863-22052911)
[»] scaffold0418 (1 HSPs)
scaffold0418 (1-178)||(7911-8088)
[»] chr6 (7 HSPs)
chr6 (1-141)||(25318090-25318230)
chr6 (1-141)||(26205584-26205724)
chr6 (1-141)||(23347231-23347371)
chr6 (1-141)||(15674061-15674205)
chr6 (2-46)||(33630334-33630378)
chr6 (2-65)||(4474935-4474998)
chr6 (1-66)||(5041754-5041819)
[»] scaffold0131 (1 HSPs)
scaffold0131 (117-183)||(4271-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-65)||(15490-15554)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 8654977 - 8654795
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8654977 gtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaacagataacaa 8654878  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  8654877 gtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacc 8654795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 47541161 - 47541343
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||||||||||  ||||||| |||| ||||||| | ||||||||||||||||| ||| |||  |||||||||||||||||| |||||    
T  47541161 gtaaagccctacactccgctaacatctcctccttccactgccacaaacgacgtctccacctccacataactcccggctgctccgaatcaacagaaaacaa 47541260  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||    
T  47541261 gtctgccacagacatgaacttattctctgttaactcaaacagtctacaaaaacgaacacaaaaaggaacatcccctaaccacc 47541343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3129883 - 3129704
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||||||||||    |||||||||| ||||||| | ||||||||||||||||  ||| ||   |||||||||||||| ||| |||||    
T  3129883 gtaaagccctacactccgctaacat---ctcctcccactgccacaaacaacgtctccacctccacgtaacccctagctgctccgaatcaatagagaacaa 3129787  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  3129786 gtctgccacagacatgaacttattctctgttaactcaaacagtctactaaaacggacacaaaaaggaacatcccctaaccacc 3129704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 7663143 - 7662966
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||| |||||||| ||||||  |||||||||||| ||||||| ||||| ||||||||||| ||||  |||  ||||||| |||||||||| |||||    
T  7663143 gtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaacagagaacaa 7663044  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaa 178  Q
    |||||||| |||||| | |||||||||| ||||||||||||  ||||||||||||||||  || ||||||||||||||    
T  7663043 gtctgccatagacatgagcttattctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 7662966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 2631634 - 2631774
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  2631634 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 2631733  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| |||||||||||| ||||||||||||||||||||||||    
T  2631734 gtcggccacagacatagacttattctctgttaactcaaaca 2631774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 23873380 - 23873240
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| ||||  |||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  23873380 gtaaagccctacactcatctagcaactcctcctcccactgccattacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 23873281  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||||||||||||||||    
T  23873280 gtcggcaacggacatagacttattctctgttaactcaaaca 23873240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 55298856 - 55298996
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| || |||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  55298856 gtaaagccctacactcatctagcaactcctcctcccactgccataaactacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 55298955  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||||||||||||||||    
T  55298956 gtcggcaacggacatagacttattctctgttaactcaaaca 55298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 20675258 - 20675440
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||| |||||||||  | | ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||| | | |||    
T  20675258 gtaaagtcctacactcatcaagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaacaaagagcaa 20675357  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||| ||||| || ||| |||||||||||||||||||||||| ||  | ||| || |||| || |||| | |||||||||||||    
T  20675358 gtcggccacggatatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctaaccacc 20675440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 8486885 - 8486745
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||||||   ||| ||| |||| ||||||| |||| ||||||||||||||||||||||   | |||||| | |||||||||||||| | |||    
T  8486885 gtaaagccctacactaatctagcaactccttctcccactgccataacctacgtctccacctccacacctccccccaccggtccgaatcaacagagagcaa 8486786  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    |||  | || |||||| ||||||||||||||||||||||||    
T  8486785 gtcgacgacggacatagacttattctctgttaactcaaaca 8486745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 49926168 - 49926112
Alignment:
Q  3 aaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccac 59  Q
    ||||||||||||||| ||||||| ||||||||||||  |||||| || || ||||||    
T  49926168 aaagccctacactccactaacaactcctcctcccacgcccacaatctccgcctccac 49926112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 134758 - 134576
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  134758 gtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaatagataacaa 134659  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  134658 gtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacc 134576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 312585 - 312403
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  312585 gtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaatagataacaa 312486  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  312485 gtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacc 312403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 328039 - 327857
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  328039 gtaaagccctacactccgctaacaagtcctcctcccactgccacaacctacgtctccacctccacaaaaccccccactgctccgaatcaatagataacaa 327940  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  327939 gtctgccacagacataaacttattctctgttaactcaaacagcctacggaaacggacacaaaaaggaacatcccctaaccacc 327857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 2e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 10486824 - 10486642
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||    
T  10486824 gtaaagccctacactccgctaacatgtcctcctcccactgccacaacctacgtctccacctccacataaccccccgctgctccgaatcaacagagaacaa 10486725  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  10486724 gtctgccacagacatgaacttattctatgttaactcaaacagcctacgaaaacggacacaaaaaggaagatcccctaaccacc 10486642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 34481183 - 34481365
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| ||| |||  ||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  34481183 gtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccacacttccccccaccgctccgaatcaacagagagcaa 34481282  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
     | ||||||||||||| |||||||||||||||||||||||| || || ||| |  |||| || |||||| |||||||||||||    
T  34481283 atatgccacagacatagacttattctctgttaactcaaacaaccgactaaacctcacacaaagaggaacctcccctaaccacc 34481365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 587752 - 587859
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| ||||||  ||||||||||||| ||| | |||||| ||||||||||| | | | ||||| |||||||||   ||||| |||||    
T  587752 gtaaagccctacactcctctaacatatcctcctcccacatccatagcctacgcctccacctccagacatccccccaatgctccgaactcacagagaacaa 587851  T
Q  101 gtctgcca 108  Q
    || |||||    
T  587852 gtttgcca 587859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 23923092 - 23923133
Alignment:
Q  8 cctacactccgctaacaagtcctcctcccacagccacaacct 49  Q
    |||||||||||||||||  ||||||||||||| |||||||||    
T  23923092 cctacactccgctaacatctcctcctcccacacccacaacct 23923133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 27795720 - 27795757
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccaca 39  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  27795720 taaagccctacactcctctaccaagtcctcctcccaca 27795757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 49731836 - 49731654
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||    
T  49731836 gtaaagccctacactccgccaacaactcctcctcccactgccacaaactacgtctccacctccacataaccccccgctgctccggatcaacagagaacaa 49731737  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  49731736 gtctgccacatacatgaacttattctctgttaactcaaacagtctacgaaaacggacacaaaaaggaacatcccctaaccacc 49731654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 30167248 - 30167066
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||| |||||||||||||||||  |||||||||||| ||||||| ||||| ||||||||||| ||||| |||  |||||||  ||||||||| |||||    
T  30167248 gtaaagtcctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaacaccctgctgctccagatcaacagagaacaa 30167149  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||| |||| | |||||||||||||||||||||||  ||||||||||||||||  || |||||||||||||||||||    
T  30167148 gtctgccacaaacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacc 30167066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 2813404 - 2813264
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  2813404 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 2813305  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||||||||||||||||    
T  2813304 gtcggcaacggacatagacttattctctgttaactcaaaca 2813264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29309644 - 29309784
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||| |||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||| ||||| | |||    
T  29309644 gtaacgccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcgacagagagcaa 29309743  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| ||||| |||||| ||||||||||||||||||||||||    
T  29309744 gtcggccacggacatagacttattctctgttaactcaaaca 29309784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6176382 - 6176242
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| || | ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  6176382 gtaaagccctacactcatctagcaactcctcctcccactgctataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 6176283  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||| ||||||||||||    
T  6176282 gtcggcgacggacatagacttattctctattaactcaaaca 6176242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9379333 - 9379447
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||| |||||||||||||||||||   ||||||||||| |||| ||||| || ||||||||||||||| | ||||||||||| ||||||||| | |||||    
T  9379333 gtaatgccctacactccgctaacatcccctcctcccactgccataacctgcgcctccacctccacaaatccccccactgctctgaatcaacatagaacaa 9379432  T
Q  101 gtctgccacagacat 115  Q
    || ||||||| ||||    
T  9379433 gtttgccacatacat 9379447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23602009 - 23602074
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccaca 66  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| |||||| |||||||||||||||    
T  23602009 gtaaagccctacactcatctagcaactcctcctcccactgccataacctatgtctccacctccaca 23602074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 8943596 - 8943653
Alignment:
Q  9 ctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccaca 66  Q
    |||||||||||| |||| || |||||||||  ||||||||||||||||||| ||||||    
T  8943596 ctacactccgcttacaaatcttcctcccacgcccacaacctacgtctccacttccaca 8943653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25873012 - 25872955
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctcca 58  Q
    ||||||||||||||||| ||| |||  ||||||||||| |||| ||||||||||||||    
T  25873012 gtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctcca 25872955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 48569943 - 48569905
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccaca 39  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  48569943 gtaaagccctacactcctctaccaagtcctcctcccaca 48569905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46248774 - 46248738
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctccca 37  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  46248774 gtaaagccctacactcccctaacaagtcttcctccca 46248738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 21528416 - 21528583
Alignment:
Q  16 ccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacat 115  Q
    ||||||||| |||||||||||||  ||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||| | ||||||||    
T  21528416 ccgctaacatgtcctcctcccactaccataacctacgtctccacctccacataaccccccattgctccgaatcaacagagaacaagtctccaacagacat 21528515  T
Q  116 aaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21528516 gaacttattctctgttaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacc 21528583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 36306020 - 36306202
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| ||||||  ||||||| |||| ||||||| ||||| ||||||||||| | ||| |||  ||||||| |||||||||| |||||    
T  36306020 gtaaagccctacactcctctaacatctcctccttccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaacagagaacaa 36306119  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||| |||| | ||||||||| |||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||    
T  36306120 gtctgccacatacatgagcttattctccgttaactcaaacagtctacgaaaaaggacacagaaaggaacatcccctaaccacc 36306202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37530802 - 37530984
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| ||| |||  ||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  37530802 gtaaagccctacactcctctagcaacccctcctcccactgccataacctacgtctccacctccacacttccccccaccgctccgaatcaacagagagcaa 37530901  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||| |||||  ||||||||||||||||||||||| || || ||  |  |||| || |||||| |||||||||||||    
T  37530902 gtctgccacatacatagtcttattctctgttaactcaaacaaccgactaagtctcacacaaagaggaacctcccctaaccacc 37530984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32353201 - 32353061
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| ||||||| |||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  32353201 gtaaagccctacactcatctagcaactcctccttccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 32353102  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| ||||| |||||| ||||||||||||||||||||||||    
T  32353101 gtcggccacggacatagacttattctctgttaactcaaaca 32353061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48073335 - 48073195
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||| ||||||  ||| ||| ||||||||||||  ||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  48073335 gtaaagccccacactcatctagcaactcctcctcccactcccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 48073236  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||||||||||||||||    
T  48073235 gtcggcaacggacatagacttattctctgttaactcaaaca 48073195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 48265622 - 48265548
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgcccc 75  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  48265622 gtaaagccctacactccgctaacaactcctcctcccactgccacaacctacgtctccacctccacataacccccc 48265548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30970512 - 30970447
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccaca 66  Q
    |||| |||||||||||||| | ||  ||||||||||||  |||||| ||||| |||||||||||||    
T  30970512 gtaaggccctacactccgccaccatctcctcctcccacgcccacaatctacgcctccacctccaca 30970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 15653609 - 15653427
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||| ||||| ||||||||||| ||||| |||  ||||||| |||||||||| |||||    
T  15653609 gtaaagccctacactccgctaacatctcctcctcccactgccacaatctacgcctccacctccagaaaaccccctgctgctccaaatcaacagagaacaa 15653510  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||| |||||| | ||||||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  15653509 gtctgccatagacatgagcttattctccgttaactcaaacagtctacgaaaacgggcacaaaaaggaacatcccctaaccacc 15653427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 46623968 - 46624111
Alignment:
Q  40 gccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaa 139  Q
    ||||||| ||||| ||||||||||| ||||  |||  ||||||| |||||||||| |||||||||||||||||||| | ||||||||| |||||||||||    
T  46623968 gccacaaactacgcctccacctccaaaaaaatccctgctgctccaaatcaacagagaacaagtctgccacagacatgagcttattctccgttaactcaaa 46624067  T
Q  140 cagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||| || |||||||||||||  ||||||||||||||||||||||    
T  46624068 cagtctgcgaaaacggacacagaaaggaacatcccctaaccacc 46624111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 13440289 - 13440429
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||| ||||||  ||| ||| ||||||||||||  ||| || |||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  13440289 gtaaagcccaacactcatctagcaactcctcctcccactaccataaactacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 13440388  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||||||||||||||||    
T  13440389 gtcggcaacggacatagacttattctctgttaactcaaaca 13440429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 12378627 - 12378450
Alignment:
Q  6 gccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaagtctg 105  Q
    |||||||||||||||||||  |||||||||||| |||||||||| || |||| |||| ||||| | |||||| ||| ||| | |||| | ||||| | ||    
T  12378627 gccctacactccgctaacatctcctcctcccactgccacaacctgcgcctccgcctcaacaaatccccccaccgcttcgacttaacaaagaacaaatttg 12378528  T
Q  106 ccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||| | |||||||||  ||||||||||||| ||| || | ||  |||  | |||||||||||||| |||||    
T  12378527 ccacagacatgatcttattctccattaactcaaacagtctatgataccgctcacagagaggaacatcccctatccacc 12378450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43105547 - 43105669
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||| ||||||||||| |||||||  |||||||||||  |||||||||| || ||||||||||||||| | ||||| || | ||||  |  ||| |||||    
T  43105547 gtaacgccctacactctgctaacatctcctcctcccattgccacaacctgcgcctccacctccacaaatctccccattgttgcgaactagtagagaacaa 43105646  T
Q  101 gtctgccacagacataaacttat 123  Q
    ||||||||| |||| | ||||||    
T  43105647 gtctgccaccgacaaagacttat 43105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45943087 - 45943152
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccaca 66  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||| || |||| ||||||||||||||    
T  45943087 gtaaagccctacactcctctagcaactcctcctcccactgccataatctacatctccacctccaca 45943152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27724009 - 27723973
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctccca 37  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  27724009 gtaaagccctacactcccctaacaagtcttcctccca 27723973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41339761 - 41339825
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccac 65  Q
    |||||| |||||||||| |||| || ||||||||||||  ||||||||| | || ||||||||||    
T  41339761 gtaaagtcctacactcctctaataattcctcctcccacgcccacaacctgcatcgccacctccac 41339825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 7452588 - 7452770
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| |||| ||  ||||||||||| ||||||| ||||| ||||||||||| | ||| |||  ||||||| |||||||||| |||||    
T  7452588 gtaaagccctacactcctctaataacacctcctcccactgccacaatctacgcctccacctccaaacaaccccctgctgctccaaatcaacagagaacaa 7452687  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  7452688 gtctgccacagacataagcttattctccgttaactcaaacagtctacgaaaacggacacagaaaggaacatcccctaaccacc 7452770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 16420914 - 16420774
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||||||| |||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  16420914 gtaaagccctacgctcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 16420815  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| |||||||||||| ||||||||||||||||||||||||    
T  16420814 gtcggccacagacatagacttattctctgttaactcaaaca 16420774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12134564 - 12134628
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccac 65  Q
    ||||||||||||||||| ||| ||||||||||||||||  ||||||| |||| | ||||||||||    
T  12134564 gtaaagccctacactcctctaccaagtcctcctcccacgcccacaacgtacgccgccacctccac 12134628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 13879390 - 13879344
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccacagccacaacc 48  Q
    |||||||||||||||| ||| ||||||||||||||||| ||| ||||    
T  13879390 taaagccctacactcctctaccaagtcctcctcccacacccataacc 13879344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 7555684 - 7555732
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccacagccacaaccta 50  Q
    |||||||||||||||| |||| || | ||||||||||| ||||||||||    
T  7555684 taaagccctacactcctctaataaattctcctcccacacccacaaccta 7555732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 45421757 - 45421938
Alignment:
Q  3 aaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgcccca-ctgctccgaatcaacagataacaag 101  Q
    ||||||||||||||||||||||  |||||||||||| || |||| ||||| ||||||||||| ||||  ||||  |||||||  ||||||||| ||||||    
T  45421757 aaagccctacactccgctaacatctcctcctcccactgcgacaatctacgcctccacctccaaaaaaaacccctgctgctccagatcaacagagaacaag 45421856  T
Q  102 tctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    ||||||||| |||| | |||||||||||||||||||||||  ||||||||||||||||  || |||||||||||||||||||    
T  45421857 tctgccacatacatgagcttattctctgttaactcaaacaatctacgaaaacggacacagaacggaacatcccctaaccacc 45421938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 13550361 - 13550500
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaag 101  Q
    ||||||||| |||||| ||| ||||||||| |||||| |||| |||||||||||||||||||||| | | ||||||||||||||||||||||| | ||||    
T  13550361 taaagccctgcactcctctagcaagtcctcatcccactgccataacctacgtctccacctccacacatccccccactgctccgaatcaacagaaagcaag 13550460  T
Q  102 tctgccacagacataaacttattctctgttaactcaaaca 141  Q
    || |||||  | ||| ||||||||||||||||||||||||    
T  13550461 tccgccacgaatatagacttattctctgttaactcaaaca 13550500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 26894516 - 26894376
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||     |||||| |||||||| ||||||| | |||    
T  26894516 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacagagagcaa 26894417  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| |  ||||||||| ||||||||||||||||||||||||    
T  26894416 gtcggtgacagacatagacttattctctgttaactcaaaca 26894376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 26899955 - 26899815
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||     |||||| |||||||| ||||||| | |||    
T  26899955 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacaccttcccccaccgctccgaagcaacagagagcaa 26899856  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| |  ||||||||| ||||||||||||||||||||||||    
T  26899855 gtcggtgacagacatagacttattctctgttaactcaaaca 26899815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 43627735 - 43627875
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | ||||||  ||||||||||| ||| | |||    
T  43627735 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccacctctccgaatcaatagagagcaa 43627834  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| |||||  ||||| ||||||||||||||||||||||||    
T  43627835 gtcggccacgaacatagacttattctctgttaactcaaaca 43627875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31085541 - 31085452
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaa 90  Q
    |||||||||||||||| |||||||  |||||||||||| | |||||||| | |||||||||||||| | | ||||||||||| |||||||    
T  31085541 gtaaagccctacactctgctaacagctcctcctcccactgtcacaacctgcatctccacctccacacatccccccactgctctgaatcaa 31085452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 33548108 - 33548197
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaa 90  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| ||||||||||||    
T  33548108 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaa 33548197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 13550884 - 13550953
Alignment:
Q  72 ccccactgctccgaatcaacagataacaagtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||||||||||||||||||||||| | |||||| |||||  | ||| ||||||||||||||||||||||||    
T  13550884 ccccactgctccgaatcaacagaaagcaagtccgccacgaatatagacttattctctgttaactcaaaca 13550953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36804148 - 36804196
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacct 49  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  36804148 gtaaagccctacactcctctaacaagtcctcctcccacgcccacaacct 36804196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36804363 - 36804400
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccac 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  36804363 gtaaagccctacactcctctaacaagtcctcctcccac 36804400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 40176905 - 40176951
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccacagccacaacc 48  Q
    |||||||||||||||| ||| ||||||||||||||||| ||| ||||    
T  40176905 taaagccctacactcctctaccaagtcctcctcccacacccataacc 40176951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22052863 - 22052911
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacct 49  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||| |||||    
T  22052863 gtaaagccctacactcctctagcaactcctcctcccactgccataacct 22052911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7911 - 8088
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    |||||||| |||||||| ||||||  |||||||||||| ||||||| ||||| ||||||||||| ||||  |||  ||||||| |||||||||| |||||    
T  7911 gtaaagccatacactccactaacatctcctcctcccactgccacaatctacgcctccacctccaaaaaaacccctgctgctccaaatcaacagagaacaa 8010  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaa 178  Q
    |||||||| |||||| | |||||||||| ||||||||||||  ||||||||||||||||  || ||||||||||||||    
T  8011 gtctgccatagacatgagcttattctctattaactcaaacaatctacgaaaacggacacagaacggaacatcccctaa 8088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 2e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 25318090 - 25318230
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||| ||||||||| |||||||||||||| | |||||| |||  ||||||||||||| |||    
T  25318090 gtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaacagatagcaa 25318189  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| ||||| |||||||||||||||| ||||||||||||||    
T  25318190 gtccgccacggacataaacttattctttgttaactcaaaca 25318230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26205584 - 26205724
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||| ||| ||| |||||||||||| |||| ||||||||| |||||||||||||| | |||||| |||  ||||||||||||| |||    
T  26205584 gtaaagccctacactcctctagcaactcctcctcccactgccataacctacgtatccacctccacaaatccccccaccgctttgaatcaacagatagcaa 26205683  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| ||||| |||||||||||||||| ||||||||||||||    
T  26205684 gtccgccacggacataaacttattctttgttaactcaaaca 26205724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 23347371 - 23347231
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaacgccccactgctccgaatcaacagataacaa 100  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||| ||||||||||||||||||||||   | |||||| |||||||||||||||| | |||    
T  23347371 gtaaagccctacactcatctagcaactcctcctcccactgccataacctacgtctccacctccacacctccccccaccgctccgaatcaacagagagcaa 23347272  T
Q  101 gtctgccacagacataaacttattctctgttaactcaaaca 141  Q
    ||| || || |||||| ||||||||||||||||||||||||    
T  23347271 gtcggcgacggacatagacttattctctgttaactcaaaca 23347231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 15674061 - 15674205
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccacaaaac----gccccactgctccgaatcaacagata 96  Q
    |||||||||| |||||  ||| ||| |||||||||||| |||||||||||||||||||||||||||   |    ||||||  |||| ||||||||||| |    
T  15674061 gtaaagccctgcactcatctagcaactcctcctcccactgccacaacctacgtctccacctccacacctccccggccccaacgctctgaatcaacagaga 15674160  T
Q  97 acaagtctgccacagacataaacttattctctgttaactcaaaca 141  Q
      ||||| |||||||||||| |||||||||| |||||||||||||    
T  15674161 gtaagtcggccacagacatagacttattctccgttaactcaaaca 15674205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 33630334 - 33630378
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccacagccacaa 46  Q
    |||||||||||||||||||||||  |||||||||||| |||||||    
T  33630334 taaagccctacactccgctaacatctcctcctcccactgccacaa 33630378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 4474935 - 4474998
Alignment:
Q  2 taaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccac 65  Q
    ||||| |||| ||||| |||| || | ||||||||||  |||||||||||||||||||||||||    
T  4474935 taaagtcctaaactcctctaataaattctcctcccacgcccacaacctacgtctccacctccac 4474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5041754 - 5041819
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccaca 66  Q
    |||| |||||||||||| ||||||| || |||||||||| |||||| | ||| | |||||||||||    
T  5041754 gtaatgccctacactcctctaacaactcttcctcccacacccacaaaccacgacgccacctccaca 5041819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 4337 - 4271
Alignment:
Q  117 aacttattctctgttaactcaaacagcctacgaaaacggacactaaaaggaacatcccctaaccacc 183  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4337 aacttattctctattaactcaaacagcctacgaaaacggacacaaaaaggaacatcccctaaccacc 4271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15554 - 15490
Alignment:
Q  1 gtaaagccctacactccgctaacaagtcctcctcccacagccacaacctacgtctccacctccac 65  Q
    ||||||||||||||||| ||||||  ||||||||||||  |||||| || || | ||||||||||    
T  15554 gtaaagccctacactcctctaacatatcctcctcccacgcccacaatctgcgacgccacctccac 15490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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