View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_368 (Length: 201)
Name: NF6868A_low_368
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_368 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 7779728 - 7779579
Alignment:
| Q |
29 |
atacgacttatggtttgtactcgtaagttaggactttcatcaaatgtatgagaccttgctataatataattcattcaaacaaaattcatgttgtaatttt |
128 |
Q |
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| T |
7779728 |
atacgacttatggtttgtactcgtcagttaggactttcatcagatgtatgagaccgtgctttaatataattcattcaaacaaaattcatgttgtaatttt |
7779629 |
T |
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| Q |
129 |
aatctatccggtctcttatgactaacacccgactattctagatagtttag |
178 |
Q |
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| T |
7779628 |
aatctatccggtctcttatgactaacacccgactattctagatagtttag |
7779579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 3738171 - 3738271
Alignment:
| Q |
63 |
tttcatcaaatgtatgagaccttgctataatataattcattcaaacaaaattcatgttgtaattttaatctatccggtctcttatgactaacacccgact |
162 |
Q |
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| T |
3738171 |
tttcatcagatgtataagactgtgctctaatataattcattcagacaaaattcatgttgtaattttaatgtatctggtatcttatatctaacatccgact |
3738270 |
T |
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| Q |
163 |
a |
163 |
Q |
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| T |
3738271 |
a |
3738271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 33125656 - 33125779
Alignment:
| Q |
25 |
tcagatacgacttatggtttgtactcgtaagttaggacttt-catcaaatgtatgagaccttgctataatataattcatt-caaacaaaattcatgttgt |
122 |
Q |
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| T |
33125656 |
tcagatacggcttatggtttgtactcgtcaattagcatttttcctcagatgtatgagactgtgcttgaatataattcatttcagacaaaattcatgttgt |
33125755 |
T |
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| Q |
123 |
aattttaatctatccggtctctta |
146 |
Q |
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| T |
33125756 |
aattttaatatatccagtatctta |
33125779 |
T |
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Target: scaffold0029 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 40745 - 40845
Alignment:
| Q |
63 |
tttcatcaaatgtatgagaccttgctataatataattca-ttcaaacaaaattcatgttgtaattttaatctatccggtctcttatgactaacacccgac |
161 |
Q |
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| T |
40745 |
tttcatcagatgtatgagactgtgctttaatataattcatttcggacaaaattcatgttgtaa-tttaatatatccagtatcttatgtttaacacccgac |
40843 |
T |
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| Q |
162 |
ta |
163 |
Q |
| |
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|| |
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| T |
40844 |
ta |
40845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 14150395 - 14150435
Alignment:
| Q |
25 |
tcagatacgacttatggtttgtactcgtaagttaggacttt |
65 |
Q |
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| T |
14150395 |
tcagatacaacttatggtttgtactcgtcagttagtacttt |
14150435 |
T |
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