View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_39 (Length: 390)
Name: NF6868A_low_39
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 24652979 - 24652616
Alignment:
| Q |
17 |
ggacatcaacttcagtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgt |
116 |
Q |
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| T |
24652979 |
ggacataaacttcagtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgt |
24652880 |
T |
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| Q |
117 |
gaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtg |
216 |
Q |
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| T |
24652879 |
gaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtg |
24652780 |
T |
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| Q |
217 |
tttagccaaagatcactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcctctcctacaatat |
316 |
Q |
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| T |
24652779 |
tttagccaaagatcactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcgtctcctacaatat |
24652680 |
T |
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| Q |
317 |
tttcccagccactggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
380 |
Q |
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| T |
24652679 |
tttcccagccactggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
24652616 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 34565256 - 34565198
Alignment:
| Q |
115 |
gtgaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagc |
173 |
Q |
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| T |
34565256 |
gtgaaaaagttgaagtcatggtggtgagcgttgagttgcttcaaccacgagtctgcagc |
34565198 |
T |
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