View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_42 (Length: 387)
Name: NF6868A_low_42
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 34 - 369
Target Start/End: Original strand, 23332595 - 23332930
Alignment:
| Q |
34 |
atatgtggacgaatgagcgatagaagcgcatgaccgatccaccctcacgttggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
133 |
Q |
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| T |
23332595 |
atatatggacgaatgagcgatagaagcgcatgaccgatccaccctcacgtgggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
23332694 |
T |
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| Q |
134 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacataagtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
233 |
Q |
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| T |
23332695 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacatacgtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
23332794 |
T |
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| Q |
234 |
agctcagcccaaccatcccgcagatagaccttgccagttttcacgtggaccttgacctcgaacatgtttctgtttggatctcgcaacatgacataatcat |
333 |
Q |
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| T |
23332795 |
agctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttggatcacgcaacatgacataatcat |
23332894 |
T |
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| Q |
334 |
caacatgcacaccatattccttggcgaaacacgatg |
369 |
Q |
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| T |
23332895 |
caacatgcaaaccatattccttggcgaaacacgatg |
23332930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 10955149 - 10955074
Alignment:
| Q |
278 |
gtggaccttgacctcgaacatgtttctgtttggatctcgcaacatgacataatcatcaacatgcacaccatattcctt |
355 |
Q |
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| T |
10955149 |
gtggaccttaacctcgaacatgttcttgttaggatcacgcaa--tgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23322335 - 23322373
Alignment:
| Q |
1 |
tcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
39 |
Q |
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| T |
23322335 |
tcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23322373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23332502 - 23332540
Alignment:
| Q |
1 |
tcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
39 |
Q |
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| T |
23332502 |
tcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23332540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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