View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_44 (Length: 384)

Name: NF6868A_low_44
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_44
NF6868A_low_44
[»] chr1 (1 HSPs)
chr1 (6-380)||(36314413-36314791)
[»] chr8 (28 HSPs)
chr8 (53-384)||(19345142-19345458)
chr8 (53-384)||(19503885-19504201)
chr8 (50-384)||(19410753-19411072)
chr8 (50-384)||(19457772-19458091)
chr8 (50-384)||(19522987-19523306)
chr8 (79-384)||(19390556-19390864)
chr8 (53-384)||(19592103-19592416)
chr8 (50-384)||(19469355-19469671)
chr8 (50-384)||(19540279-19540595)
chr8 (228-383)||(19337427-19337582)
chr8 (53-165)||(19337681-19337793)
chr8 (228-384)||(19355446-19355602)
chr8 (53-152)||(19355714-19355813)
chr8 (53-176)||(19468410-19468533)
chr8 (53-176)||(19555331-19555454)
chr8 (71-176)||(19404923-19405028)
chr8 (259-384)||(19468610-19468735)
chr8 (259-384)||(19555531-19555656)
chr8 (73-170)||(19376801-19376898)
chr8 (241-384)||(19376590-19376733)
chr8 (246-384)||(19172821-19172959)
chr8 (259-383)||(19404722-19404846)
chr8 (79-161)||(19172660-19172742)
chr8 (246-384)||(19287687-19287825)
chr8 (66-164)||(19287901-19287999)
chr8 (271-383)||(19370934-19371046)
chr8 (271-383)||(19341154-19341266)
chr8 (95-142)||(19371145-19371192)
[»] chr6 (2 HSPs)
chr6 (80-176)||(19543241-19543337)
chr6 (246-384)||(19543039-19543177)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 380
Target Start/End: Original strand, 36314413 - 36314791
Alignment:
Q  6 aaccataaattacattccattcatatgatgatgcattgtccattt-gctt---ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  36314413 aaccataaattacattccattcatatgatgatgcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 36314512  T
Q  102 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccgctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  36314513 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccactt 36314612  T
Q  202 gttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttct 301  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36314613 gttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtact 36314712  T
Q  302 gatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacacttt 380  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314713 gatacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacacttt 36314791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 53 - 384
Target Start/End: Complemental strand, 19345458 - 19345142
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19345458 ttggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19345359  T
Q  153 tatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 252  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | || ||||||| ||| | |||||||  ||||||||||||||||    
T  19345358 catatctgcattcccaatatctcca------------tcatgacc---tactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatcttta 19345274  T
Q  253 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 352  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||| ||| | |||||||||||||| ||||||||||| |    
T  19345273 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaactttcgtgggaatgttctcgaatattccattgctat 19345174  T
Q  353 taagttttccacttttccaatacactttgccg 384  Q
    |||||||||| |||||||||||| || |||||    
T  19345173 taagttttccgcttttccaatacgctatgccg 19345142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 53 - 384
Target Start/End: Original strand, 19503885 - 19504201
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19503885 ttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19503984  T
Q  153 tatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 252  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | |||||||||| ||| | |||||||  ||||||||||||||||    
T  19503985 catatctgcattcccaatctctcca------------tcatgacc---tactaacctccccttcgaggttagttgccatcgtgcaaacttcccatcttta 19504069  T
Q  253 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 352  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||| ||  | |||||||||||||| |||||||||||||    
T  19504070 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaacttttgtgggaatgttctcgaatattccattgcttt 19504169  T
Q  353 taagttttccacttttccaatacactttgccg 384  Q
    |||||||||| |||||||||| ||||||||||    
T  19504170 taagttttccgcttttccaatgcactttgccg 19504201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 19411072 - 19410753
Alignment:
Q  50 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 149  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19411072 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19410973  T
Q  150 acatatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 249  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19410972 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19410888  T
Q  250 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgc 349  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||| ||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19410887 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19410788  T
Q  350 ttttaagttttccacttttccaatacactttgccg 384  Q
    ||||||||||||| |||||||||||||||||||||    
T  19410787 ttttaagttttccgcttttccaatacactttgccg 19410753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 19458091 - 19457772
Alignment:
Q  50 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 149  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  150 acatatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 249  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19457991 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19457907  T
Q  250 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgc 349  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||| ||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19457906 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19457807  T
Q  350 ttttaagttttccacttttccaatacactttgccg 384  Q
    ||||||||||||| |||||||||||||||||||||    
T  19457806 ttttaagttttccgcttttccaatacactttgccg 19457772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 384
Target Start/End: Original strand, 19522987 - 19523306
Alignment:
Q  50 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 149  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  150 acatatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 249  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19523087 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19523171  T
Q  250 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgc 349  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||| ||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19523172 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19523271  T
Q  350 ttttaagttttccacttttccaatacactttgccg 384  Q
    ||||||||||||| |||||||||||||||||||||    
T  19523272 ttttaagttttccgcttttccaatacactttgccg 19523306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 79 - 384
Target Start/End: Complemental strand, 19390864 - 19390556
Alignment:
Q  79 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 178  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  179 tagcattgtct---tcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttc 275  Q
    ||  | | |||   |||||| | ||| ||||| | ||||||||||  |    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttc 19390665  T
Q  276 attcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatac 375  Q
    || ||||||||| ||||||||||  ||||| ||| ||||||||||||  |||||||||||||| |  |||||||||||||||||||| ||||||||||||    
T  19390664 atccttgttagagacaataatgtattgatatatacgttgaacattcaccggaatgttctcgaataaaccattgcttttaagttttccgcttttccaatac 19390565  T
Q  376 actttgccg 384  Q
    |||||||||    
T  19390564 actttgccg 19390556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 53 - 384
Target Start/End: Complemental strand, 19592416 - 19592103
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| |||||    
T  19592416 ttggtgttcccgcctttttctgaaaaacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgtaaca 19592320  T
Q  153 tatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 252  Q
     |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  ||||||||||||||||    
T  19592319 catatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatcttta 19592235  T
Q  253 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 352  Q
    ||||| || | |||||||||||||| ||||||||| |||||||||| ||||||| ||| |||||||||    ||||| |||||||| | |||||||||||    
T  19592234 acttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttt 19592135  T
Q  353 taagttttccacttttccaatacactttgccg 384  Q
    |||||||||| |||||||||||||||||||||    
T  19592134 taagttttccgcttttccaatacactttgccg 19592103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 50 - 384
Target Start/End: Original strand, 19469355 - 19469671
Alignment:
Q  50 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 149  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19469355 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19469451  T
Q  150 acatatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 249  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19469452 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19469536  T
Q  250 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgc 349  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||| ||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19469537 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19469636  T
Q  350 ttttaagttttccacttttccaatacactttgccg 384  Q
    ||||||||||||| |||||||||||||||||||||    
T  19469637 ttttaagttttccgcttttccaatacactttgccg 19469671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 50 - 384
Target Start/End: Original strand, 19540279 - 19540595
Alignment:
Q  50 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 149  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19540279 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19540375  T
Q  150 acatatatctgcatttccaatttctccactagcattgtcttcatcaccgcttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 249  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19540376 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19540460  T
Q  250 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgc 349  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||| ||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19540461 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19540560  T
Q  350 ttttaagttttccacttttccaatacactttgccg 384  Q
    ||||||||||||| |||||||||||||||||||||    
T  19540561 ttttaagttttccgcttttccaatacactttgccg 19540595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 228 - 383
Target Start/End: Complemental strand, 19337582 - 19337427
Alignment:
Q  228 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattgga 327  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||| || ||| ||||||| |||   |||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcagga 19337483  T
Q  328 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgcc 383  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19337482 atgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgcc 19337427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 19337793 - 19337681
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19337793 ttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19337694  T
Q  153 tatatctgcattt 165  Q
     || |||||||||    
T  19337693 catgtctgcattt 19337681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 228 - 384
Target Start/End: Complemental strand, 19355602 - 19355446
Alignment:
Q  228 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattgga 327  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||| | |||| |||  |||||| |||  ||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctgga 19355503  T
Q  328 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccg 384  Q
    ||||||||||| |||||||| ||| |||||||||| |||||||||| ||||||||||    
T  19355502 atgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccg 19355446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 19355813 - 19355714
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19355813 ttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19355714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  153 tatatctgcatttccaatttctcc 176  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 19555331 - 19555454
Alignment:
Q  53 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 152  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19555331 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19555430  T
Q  153 tatatctgcatttccaatttctcc 176  Q
     |||||||||||| |||| |||||    
T  19555431 catatctgcatttacaatatctcc 19555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 19405028 - 19404923
Alignment:
Q  71 tctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 170  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19405028 tctgaaacacctcaccaggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaat 19404929  T
Q  171 ttctcc 176  Q
     |||||    
T  19404928 atctcc 19404923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 19468610 - 19468735
Alignment:
Q  259 aaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 358  Q
    |||| |||||||||||| |  |||||||| |||||||||| |||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19468610 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19468709  T
Q  359 ttccacttttccaatacactttgccg 384  Q
    |||| |||||||||||||||||||||    
T  19468710 ttccgcttttccaatacactttgccg 19468735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 19555531 - 19555656
Alignment:
Q  259 aaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 358  Q
    |||| |||||||||||| |  |||||||| |||||||||| |||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19555531 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19555630  T
Q  359 ttccacttttccaatacactttgccg 384  Q
    |||| |||||||||||||||||||||    
T  19555631 ttccgcttttccaatacactttgccg 19555656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 19376898 - 19376801
Alignment:
Q  73 tgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 170  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  19376898 tgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacatatatctgcatttccaat 19376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 241 - 384
Target Start/End: Complemental strand, 19376733 - 19376590
Alignment:
Q  241 ttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaaca 340  Q
    |||| |||||||| |||||||   || |||||||||| ||||||||| ||||| |||| | ||||||||| |||||||||    ||||| |||||||| |    
T  19376733 ttccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaata 19376634  T
Q  341 ttccattgcttttaagttttccacttttccaatacactttgccg 384  Q
     ||||||||||||||||||||| |||||||||||||||||||||    
T  19376633 atccattgcttttaagttttccgcttttccaatacactttgccg 19376590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 384
Target Start/End: Original strand, 19172821 - 19172959
Alignment:
Q  246 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattcca 345  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||  ||||||| ||||||||| |||| | ||||||||| ||| | ||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  346 ttgcttttaagttttccacttttccaatacactttgccg 384  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccg 19172959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 19404846 - 19404722
Alignment:
Q  259 aaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 358  Q
    |||| |||||||||||||| ||||||||| |||||| |||  |||||||||  |||||||||    ||||| |||||||| | ||||| |||||||||||    
T  19404846 aaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatccatcgcttttaagtt 19404747  T
Q  359 ttccacttttccaatacactttgcc 383  Q
    |||| ||||||||||||||||||||    
T  19404746 ttccgcttttccaatacactttgcc 19404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  79 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 161  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 384
Target Start/End: Complemental strand, 19287825 - 19287687
Alignment:
Q  246 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattcca 345  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||  ||||||| | ||||||| |||| ||||||||||||||| |  |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  346 ttgcttttaagttttccacttttccaatacactttgccg 384  Q
    |||| | || ||||||| |||||||||||||||||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccg 19287687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  66 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 164  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 383
Target Start/End: Complemental strand, 19371046 - 19370934
Alignment:
Q  271 tcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 370  Q
    |||||||  |||||||| ||||| ||||   |||||| |||||| ||||||  ||||||||||||||| | |||||||||| ||||||||||||||||||    
T  19371046 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttcc 19370947  T
Q  371 aatacactttgcc 383  Q
    ||| |||||||||    
T  19370946 aatgcactttgcc 19370934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 383
Target Start/End: Complemental strand, 19341266 - 19341154
Alignment:
Q  271 tcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 370  Q
    |||||||  |||||||| ||||| ||||   |||||| |||||| ||||||  | ||||||||||||| | ||||||||||  |||||||||||||||||    
T  19341266 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttcc 19341167  T
Q  371 aatacactttgcc 383  Q
    ||| |||||||||    
T  19341166 aatgcactttgcc 19341154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  95 tacaagttggtatatcctcccatttttggcaccctccattgctattat 142  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  80 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 176  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 384
Target Start/End: Complemental strand, 19543177 - 19543039
Alignment:
Q  246 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgttctgatacatatgttgaacattcattggaatgttctcgaacattcca 345  Q
    |||||||| || |||||  || ||||||||||  || ||||||||||||||||  | ||||| | |||||||||||   || |||||| |||| |  |||    
T  19543177 atctttaattttaaaagtaaaggaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataaccca 19543078  T
Q  346 ttgcttttaagttttccacttttccaatacactttgccg 384  Q
    || ||| |||||||||| |||||||||||||||||||||    
T  19543077 tttcttctaagttttccgcttttccaatacactttgccg 19543039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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