View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_45 (Length: 383)
Name: NF6868A_low_45
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_45 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 28873413 - 28873787
Alignment:
| Q |
10 |
gacatcatcagttcctcccatcaacctgcctatttttctttaattttcctcaattgtttttgaaacagattttaatatgatcttgtttgtgtttgtatca |
109 |
Q |
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| T |
28873413 |
gacatcatcagttcctcccatgaatctgcctatttttctttaattttcctcaattgtttttgaaacagattttaatatgatcttgtttgtgtttgtatca |
28873512 |
T |
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| Q |
110 |
gttattgaagcagcaaatggattgcaagcttggaaggttttggaggatttaaccaatcatattgatctcattttaactgaggtggcaatgcctggcttat |
209 |
Q |
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| T |
28873513 |
gttattgaagcagcaaatggattgcaagcttggaaggttttggaggatttaaccaatcacattgatctcattttaactgaggtggcaatgcctggcttat |
28873612 |
T |
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| Q |
210 |
caggcattgcacttctatacaagattatgggccacccaacacggaaaaacgttccagtaattagtaagtttttccaagtgcctatatatgtttggtttga |
309 |
Q |
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| T |
28873613 |
caggcattgcacttctatacaagattatgggccacccaacacggaaaaatgttccagtaattagtaagtttttccaagtgcctatatatgtttggtttga |
28873712 |
T |
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| Q |
310 |
gca-nnnnnnnnctcattacatgctgtaaaagagctactctttctatggcttctaatgggattggtctgcagtga |
383 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28873713 |
gcattttttttcctcattacatgctgtaaaagagctactctttctatggcttctaatgggattggtctgcagtga |
28873787 |
T |
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