View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_46 (Length: 380)

Name: NF6868A_low_46
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_46
NF6868A_low_46
[»] chr3 (11 HSPs)
chr3 (112-257)||(6164315-6164460)
chr3 (112-254)||(13282953-13283100)
chr3 (112-254)||(6138998-6139142)
chr3 (112-186)||(6234104-6234178)
chr3 (111-181)||(6241889-6241959)
chr3 (112-179)||(6255118-6255185)
chr3 (18-55)||(6262404-6262441)
chr3 (18-55)||(9825145-9825182)
chr3 (18-55)||(6271844-6271881)
chr3 (141-181)||(6859282-6859322)
chr3 (141-181)||(7746936-7746976)
[»] chr7 (1 HSPs)
chr7 (5-55)||(35681680-35681730)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 6164315 - 6164460
Alignment:
Q  112 agtacacataagtcggagggatttcgtaaagtggctcgagagagatataatcaatgcatatatcttgagttgtttcattattaggccatagatttcaaga 211  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6164315 agtacacataagtcagagggatttcgtaatgtggctcaagagagatatgatcaatgcatatatcttgagttgtttcattattaggccattgatttcaaga 6164414  T
Q  212 tttatgaagtgaaataatcaacaatacaggaagaaggatggggatt 257  Q
    |||||||||||||||||||||||| |||||| || |||||||||||    
T  6164415 tttatgaagtgaaataatcaacaagacaggaggatggatggggatt 6164460  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 13283100 - 13282953
Alignment:
Q  112 agtacacataagtcggagggatttcgtaaagtggctcgagagagatataatcaatgcatatatcttgagttgtttcattattaggccatagatttcaaga 211  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13283100 agtacgcataagtcagagggatttcgtaaagtggctcgagagagatatgatcaatgcatatatcttgagttgttttattattaggccatagatttcaaga 13283001  T
Q  212 tttatgaagtgaaa-----taatcaacaatacaggaagaaggatgggg 254  Q
    ||||||||||||||     |||||||||| ||||||||| ||||||||    
T  13283000 tttatgaagtgaaatggagtaatcaacaagacaggaagatggatgggg 13282953  T

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Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 6138998 - 6139142
Alignment:
Q  112 agtacacataagtcggagggatttcgtaaagtggctcgaga--gagatataatcaatgcatatatcttgagttgtttcattattaggccatagatttcaa 209  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6138998 agtacacataggtcaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgtttcattattaggccatagatttcaa 6139097  T
Q  210 gatttatgaagtgaaataatcaacaatacaggaagaaggatgggg 254  Q
    ||||||| || ||||||||||||||| ||||||||| ||||||||    
T  6139098 gatttataaattgaaataatcaacaagacaggaagatggatgggg 6139142  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 6234104 - 6234178
Alignment:
Q  112 agtacacataagtcggagggatttcgtaaagtggctcgagagagatataatcaatgcatatatcttgagttgttt 186  Q
    |||||||||| ||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  6234104 agtacacataggtcagagggatttcgtaaagtgtctcgagagatatatgatcaatgcatatatcttgagttgttt 6234178  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 6241889 - 6241959
Alignment:
Q  111 aagtacacataagtcggagggatttcgtaaagtggctcgagagagatataatcaatgcatatatcttgagt 181  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  6241889 aagtacacataggtcagagggattccgtaaagtggctcgagagagatatgatcaatgcatatatcttgagt 6241959  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 6255118 - 6255185
Alignment:
Q  112 agtacacataagtcggagggatttcgtaaagtggctcgagagagatataatcaatgcatatatcttga 179  Q
    |||||||| | ||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  6255118 agtacacacaggtcagagggatttcgtaaagtgactcgagagagatatgatcaatgcttatatcttga 6255185  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6262404 - 6262441
Alignment:
Q  18 tttggcaccacagaggtgactagatgatcttccataca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6262404 tttggcaccacagaggtgactagatgatcttccataca 6262441  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 9825182 - 9825145
Alignment:
Q  18 tttggcaccacagaggtgactagatgatcttccataca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9825182 tttggcaccacagaggtgactagatgatcttccataca 9825145  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6271844 - 6271881
Alignment:
Q  18 tttggcaccacagaggtgactagatgatcttccataca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6271844 tttggcaccacagaggtgactagatgctcttccataca 6271881  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 6859322 - 6859282
Alignment:
Q  141 agtggctcgagagagatataatcaatgcatatatcttgagt 181  Q
    ||||||| |||||||| || |||||||||||||||||||||    
T  6859322 agtggctagagagagacatgatcaatgcatatatcttgagt 6859282  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 7746936 - 7746976
Alignment:
Q  141 agtggctcgagagagatataatcaatgcatatatcttgagt 181  Q
    ||||||||||||||||||| |||||| |||||| |||||||    
T  7746936 agtggctcgagagagatatgatcaatacatataccttgagt 7746976  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 35681730 - 35681680
Alignment:
Q  5 agtttggtgttattttggcaccacagaggtgactagatgatcttccataca 55  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35681730 agtttggtgttattttggcaccacagaggggactagatgatcttccataca 35681680  T

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