View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_50 (Length: 370)

Name: NF6868A_low_50
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_50
NF6868A_low_50
[»] chr6 (2 HSPs)
chr6 (1-367)||(18459709-18460077)
chr6 (4-99)||(24133346-24133438)
[»] chr3 (3 HSPs)
chr3 (3-358)||(6162002-6162355)
chr3 (3-367)||(52972390-52972752)
chr3 (3-364)||(54586330-54586689)
[»] chr8 (5 HSPs)
chr8 (3-357)||(23710487-23710839)
chr8 (3-339)||(754003-754337)
chr8 (3-367)||(9173677-9174024)
chr8 (3-151)||(14822471-14822616)
chr8 (3-105)||(9710464-9710562)
[»] chr7 (3 HSPs)
chr7 (3-367)||(41257304-41257665)
chr7 (3-367)||(19215459-19215819)
chr7 (177-357)||(15889269-15889450)
[»] chr2 (5 HSPs)
chr2 (3-367)||(38619175-38619536)
chr2 (3-352)||(17312488-17312834)
chr2 (8-364)||(9635368-9635722)
chr2 (4-50)||(19991633-19991679)
chr2 (4-50)||(26262693-26262739)
[»] chr1 (6 HSPs)
chr1 (3-367)||(50515262-50515623)
chr1 (3-359)||(44713052-44713405)
chr1 (3-203)||(45910520-45910717)
chr1 (5-50)||(16768021-16768066)
chr1 (4-44)||(10548339-10548379)
chr1 (7-50)||(6851381-6851424)
[»] chr5 (6 HSPs)
chr5 (4-367)||(13850662-13851022)
chr5 (3-359)||(25761168-25761521)
chr5 (5-364)||(38965578-38965934)
chr5 (3-367)||(20236122-20236481)
chr5 (186-367)||(34833843-34834024)
chr5 (3-105)||(23352198-23352297)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 18460077 - 18459709
Alignment:
Q  1 gaggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnn-ggcgatttccttttgatcacgtca 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||    
T  18460077 gaggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataataaaccttcccccatttgttttttttggcgatttccttttgatcacgtca 18459978  T
Q  100 tatgatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttca 199  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||    
T  18459977 tatgatctgtactgaaacgttctggaatttcaaatccggactgcattcatgcgttccggattttgaatttcggatagaaccagtgcagaaactgtgttca 18459878  T
Q  200 t-ttttgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgct 298  Q
    | ||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||    
T  18459877 tcttttgactctgcttcgcactgctttcagtcatggttgttcctgttgatgccccacatgatgatccaccttagaatgaacctcctattgtgttgacgct 18459778  T
Q  299 tcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  18459777 tcttttacttgaagatgcgcatgatgacggaaatgccaaatccgtgaatcccccaccaccaccaccaaa 18459709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 24133438 - 24133346
Alignment:
Q  4 gttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtca 99  Q
    |||||||||||||||||||||||||| |||||| |||||||||   |||||||||||| ||||||       |||| |||||||||||||| ||||    
T  24133438 gttaacatcatcattttcgactgaattcaaaggtaatgtgtat---ataaaccttccctcattcgatttctaggcgctttccttttgatcatgtca 24133346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 6162355 - 6162002
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||   ||||| ||| | |||       |||||||  |||||||||||||  |||    
T  6162355 ggttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataa---acctttccctagtcgatttttaggcgattaacttttgatcacgttgtat 6162259  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||| |  | || |  |||| ||||| | |||||||  |||||||||||||||| |||||||| |||  ||| |  ||||||| |||||||||||||||||    
T  6162258 gatattcattgtactgttccggaatgttaaatccggtctgcattcatgcgttctggatttcggattccggagagcaccagtgcagaaactgtgttcattt 6162159  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||||| ||||||||| |||||||||| |||||||||| ||||| ||| | ||||  ||||||||||||||||||||||||||||||||| ||||||    
T  6162158 tctgactctacttcgcactgttttcagtcatggttgttcctgttgatcccctaaatgatgatccacctcagaatgaacctcctattgtgttgctgcttct 6162059  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccacc 358  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6162058 tttacttgaagatgcgcatgattccggaaatgccaaatccgagaatcccccaccacc 6162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 367
Target Start/End: Complemental strand, 52972752 - 52972390
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttccccc-attcgnnnnnnnggcgatttccttttgatcacgtcata 101  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||   |||||||||| |||||       ||||||||| ||||||||||||||||    
T  52972752 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtgtataa---accttccccccattcgttttttaggcgatttctttttgatcacgtcata 52972656  T
Q  102 tgatctatactgaa-acgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcat 200  Q
    |||| | ||||  | | |||| ||| | | ||||| | |||| ||||||||||||||||||| ||| | |||||   |||| |  |||||||||||||||    
T  52972655 tgatttgtactctacatgttc-ggactgtaaaatctggactggattcatgcgttccggattttgaaatctggactgcaccaatacagaaactgtgttcat 52972557  T
Q  201 ttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgctt 299  Q
    ||| ||||| ||  | ||||| ||| |||  | |||||||    ||||||||||| |||   |||||||| ||| ||||| ||||| ||||||| | |||    
T  52972556 tttctgactatgtct-gcactgtttacagatatggttgttttggttgatgccccaaatgttgatccacctgagattgaacatcctaatgtgttgtctctt 52972458  T
Q  300 cttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||  |||||||    
T  52972457 cttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccatcaccgccaccaaa 52972390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 364
Target Start/End: Original strand, 54586330 - 54586689
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||| |    ||| ||||||||       ||| ||||||||||||||||||||||     
T  54586330 ggttaacatcatcattttcgtctgaatgcaaaggtagtgtgtatataaaat---ttctcccattcgttttttaggcaatttccttttgatcacgtcatac 54586426  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||| |    || | ||  | || || | |||||||||||  |||  |||||| | | |  | |||| ||||||  | ||| | |||||||||    
T  54586427 gatctgtactggatttatccgaaaaataaattcgggactgcattcatatgtttaggatttagtaatccgaacaacaccagtacaaaaattatgttcattt 54586526  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||||||||||||| | |||||||| | |||||||||  ||||||||||| ||||  ||||| || ||| ||||| || ||| ||||||||| ||||    
T  54586527 tctgactctgcttcgcattgttttcagttatggttgttccggttgatgccccaaatgatgatccagctgagattgaacatcatatcgtgttgccggttct 54586626  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacacc 364  Q
    |||||||||||||| |||| |||| |||||||||||||||| ||| |||||||||||| ||||    
T  54586627 tttacttgaagatgtgcataattcgggaaatgccaaatccgagaagcccccaccaccaccacc 54586689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 3 - 357
Target Start/End: Complemental strand, 23710839 - 23710487
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||   |||||||||||||||       |||||||||||||||||||||||||||    
T  23710839 ggttaacatcatcattttcgtctgaatgcaaaggtaatgtgtatataa---accttcccccattcgttttttaggcgatttccttttgatcacgtcatat 23710743  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||| | ||||| |||||||  |||| | |||| || |||||||||||||||||||||||||||||| | |||   ||||||  | ||||| |||||||||    
T  23710742 gatatgtactgtaacgttccagaatatgaaattcggactgcattcatgcgttccggatttcgaattctagactgcaccagtacataaactatgttcattt 23710643  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| |  |||| |||| ||  | ||||||| |  ||||||||||| ||||  |||||||| | | |||||||| |||| |||||||||||||    
T  23710642 tctgactatgcatgacactgtttttagatatggttgtttcggttgatgccccaaatgatgatccacctgaaattgaacctcatattatgttgccgcttct 23710543  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccac 357  Q
    |||||||||||||| | |||||||||| ||||||||||| | ||||||||||||||    
T  23710542 tttacttgaagatgtgtatgattccgggaatgccaaatctgagaatcccccaccac 23710487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 754003 - 754337
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||| ||||||||||||| ||||||||||||||  |||||||||||||   |||||||||||||||       |||||||||||||||||||| ||||||    
T  754003 ggttgacatcatcatttttgactgaatgcaaagataatgtgtatataa---accttcccccattcgttttttaggcgatttccttttgatcacttcatat 754099  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||| | |||||  |||| | ||||||| |||||||||||||||||| ||||| ||| |   ||    |||||   |||||||||||||||||    
T  754100 gatctgtactgtaccgttccagaatatgaaatccggactgcattcatgcgttccagattttgaaatccagagtgcaccagcacagaaactgtgttcattt 754199  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | | ||| ||| |  || | |||| ||  | |||||||||  ||||||||||| |||   |||||||| ||| ||||||| |||||||||||| ||||||    
T  754200 tctaactatgcctgtcaatgtttttagatatggttgttccggttgatgccccaaatgctgatccacctaagattgaaccttctattgtgttgctgcttct 754299  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaat 339  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  754300 tttacttgaagatgcacatgattccgggaatgccaaat 754337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 3 - 367
Target Start/End: Complemental strand, 9174024 - 9173677
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||   |||||||||||||||       || ||||| ||||||||||||||||||    
T  9174024 ggttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataa---accttcccccattcgttttttaggagattttcttttgatcacgtcatat 9173928  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||  | || || |||              ||| |||||||||||||||||||| || |   |||   ||||||  ||||||| |||||||||    
T  9173927 gatctgtactctaccggtccgga--------------ctggattcatgcgttccggatttcaaaatccagactgcaccagtacagaaactatgttcattt 9173842  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| | ||||| |||||||  | ||||| |||  |||||  |||| |||   |||||||| ||| ||||| ||||| ||||||||| |||||    
T  9173841 tctgactatgcct-gcactgttttcagatatggttgctccggttgatatcccaaatgttgatccacctgagattgaacatcctaatgtgttgccacttct 9173743  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  9173742 tttacttgaagatacgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa 9173677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 14822471 - 14822616
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||| | || |||| ||||| |||||||||   |||||||||||||||||||        ||||||||||||| ||||| ||||||    
T  14822471 ggttaacatcatcatttttgtctaaatgtaaaggtaatgtgtat---ataaaccttcccccattcgaattttaagcgatttccttttaatcacatcatat 14822567  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgc 151  Q
    ||||  ||||| ||| ||| ||||  | ||||||| |||||||||||||    
T  14822568 gatccgtactggaacattccggaaaattaaatccggactgcattcatgc 14822616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 9710562 - 9710464
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    |||||||||||||||        ||| |||| |||||||||| |||||||    
T  9710562 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatat----aaccttcccccattcattttttaggcaattttcttttgatcatgtcatat 9710467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 3 - 367
Target Start/End: Complemental strand, 41257665 - 41257304
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   ||||| |||||||||       |||||||||||||||||||||||||||    
T  41257665 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---acctttccccattcgttttttaggcgatttccttttgatcacgtcatat 41257569  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||| | ||||| | | ||  ||| | |  |||| | | || |||||||||||| |||||||||| |  ||||   ||||||  |||||||||||| ||||    
T  41257568 gatatgtactgtaccttttcggactatgcaatctggattggattcatgcgttctggatttcgaaatccggactgcaccagtacagaaactgtgtttattt 41257469  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| | ||||| |||||||  | |||||||||  ||||||||||| |||   |||||||| ||| ||||||||||| || ||||||||||||    
T  41257468 tctgactatgcct-gcactgttttcagatatggttgttccgattgatgccccaaatgttgatccacctgagattgaacctcctaatgcgttgccgcttct 41257370  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  41257369 tttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa 41257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 19215459 - 19215819
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||| |       ||| |||| ||||||||||||||||||    
T  19215459 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---accttcccccattagttttttaggcaattttcttttgatcacgtcatat 19215555  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| || || | | ||| ||| | |  |||||| |||| |||||||||||||||| |||||| | || ||   | ||||  ||||||||||| |||||    
T  19215556 gatctgtattgtacctttcaggactatgcaatccggactggattcatgcgttccggagttcgaaatctgaactgcatcagtacagaaactgtgt-cattt 19215654  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| | ||||| |||||||    |||||||||  ||||||||||| |||   |||||||| ||| |||||||| || ||  |||||||||||    
T  19215655 tctgactatgcct-gcactgttttcagatgtggttgttccggttgatgccccaaatgttgatccacctgagactgaacctcttaatgcattgccgcttct 19215753  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  19215754 tttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa 19215819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 357
Target Start/End: Original strand, 15889269 - 15889450
Alignment:
Q  177 aaccagtgtagaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaat 275  Q
    |||||||  ||||||| |||||||||| |||||  |||| ||||| |||||||| | |||||||||  ||||||||||| ||||  ||||| || ||| |    
T  15889269 aaccagtacagaaactatgttcattttctgactaagcttggcactgttttcagttatggttgttccggttgatgccccaaatgatgatccagctgagatt 15889368  T
Q  276 gaacctcctattgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccac 357  Q
    |||| |||||| |  |||| | |||||||||||||||||| |||||||||  ||| | |||||| || ||||||||||||||    
T  15889369 gaacatcctatcgctttgctggttcttttacttgaagatgtgcatgattcttgaatttccaaattcgagaatcccccaccac 15889450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 38619175 - 38619536
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   ||||| ||| ||| |       |||||||||||||||||||||||||||    
T  38619175 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---acctttcccaatttgttttttaggcgatttccttttgatcacgtcatat 38619271  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||| | | ||| ||| | |  |||||| |||| |||||||||||  |||||||||| | | |||   ||||||  |||||||||||||||||    
T  38619272 gatctgtactgtacctttccggactatgcaatccggactggattcatgcgttatggatttcgaaatctagactgcaccagtacagaaactgtgttcattt 38619371  T
Q  203 tt-gactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    || |||| ||| | | ||| |||||||  | |||||||||  |||||||| || |||   |||||||| ||| ||||||||||| || ||||||||||||    
T  38619372 tttgactatgcct-gtactgttttcagatatggttgttccgattgatgcctcaaatgttgatccacctgagattgaacctcctaatgcgttgccgcttct 38619470  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  38619471 tttacttgaagacgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa 38619536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 352
Target Start/End: Complemental strand, 17312834 - 17312488
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   |||||| ||||||||       |||||||||||||||||||||||||||    
T  17312834 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---accttctcccattcgttttttaggcgatttccttttgatcacgtcatat 17312738  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||| | ||||  | || ||  || | | ||||||||||||  |||| | ||| | ||||||||| |  ||||   ||||||  |||||||||||||||||    
T  17312737 gatttgtactctaccggtccagactctgaaatccgaactgggttcacgtgtttcagatttcgaaatccggactgcaccagtacagaaactgtgttcattt 17312638  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||||| ||||| |||||||  | ||||||||   ||||||||||| |||   |||||||| ||| ||||| ||||| |||||||||||||||    
T  17312637 tctgactatgctt-gcactgttttcagatatggttgttctggttgatgccccaaatgttgatccacctgagattgaacatcctaatgtgttgccgcttct 17312539  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatccccc 352  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  17312538 tttacttgaagatgcgcatgattccggtaatgccaaatccgagaaaccccc 17312488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 9635368 - 9635722
Alignment:
Q  8 acatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatatgatct 107  Q
    ||||||||||||||  |||| |||||||  |||||||||||||   ||||||||  ||| |       |||| |||||||||||||||||||||||||||    
T  9635368 acatcatcattttcatctgagtgcaaagataatgtgtatataa---accttcccttatttgaattttaggcgctttccttttgatcacgtcatatgatct 9635464  T
Q  108 atactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt-tga 206  Q
     ||||| | |  |  | ||  | ||||| | ||||||||||||| || | |||||   | |  | |||| ||||||  | |||||||| ||||||| |||    
T  9635465 gtactggagcaatacgaaaaataaaatctggactgcattcatgcatttcagattttttaatccgaacaacaccagtacaaaaactgtgctcattttctga 9635564  T
Q  207 ctctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttcttttac 306  Q
     ||||||||||||| |||||||| | |||||||||| ||||||||||| ||||  |||||||| ||| ||| |||||||||||||||||| |||||||||    
T  9635565 gtctgcttcgcactgttttcagttatggttgttcctgttgatgccccaaatgatgatccacctgagattgatcctcctattgtgttgccggttcttttac 9635664  T
Q  307 ttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacacc 364  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  9635665 ttgaagatgtgcatgattccgaaaatgccaaatccgagaatcccccaccaccaccacc 9635722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 19991679 - 19991633
Alignment:
Q  4 gttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataa 50  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    
T  19991679 gttaacatcatcattttcgaatgaatgcaaaggtaatgtgtatataa 19991633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 26262693 - 26262739
Alignment:
Q  4 gttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataa 50  Q
    ||||||| ||||||||| | ||||||||||||| |||||||||||||    
T  26262693 gttaacaacatcatttttgtctgaatgcaaaggtaatgtgtatataa 26262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 50515262 - 50515623
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   ||||| ||||||| |       |||||||||||||||||||||||||||    
T  50515262 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa---acctttccccatttgttttttaggcgatttccttttgatcacgtcatat 50515358  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||| | | ||| ||| | |  |||||| |||| |||||||| ||||||| |||||| |  |||| | ||||||  | |||||||||||||||    
T  50515359 gatctgtactgtacctttccggactatgcaatccggactggattcatgctttccggaattcgaaatccggactacaccagtacaaaaactgtgttcattt 50515458  T
Q  203 tt-gactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    || |||| ||| | ||||| ||||||   | |||||||||  ||||| ||||| |||   |||||||| ||| ||||||| | | ||  |||||||||||    
T  50515459 tttgactatgcat-gcactgttttcatatatggttgttccggttgataccccaaatgttgatccacctgagattgaaccttcaaatgcattgccgcttct 50515557  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |||||||    
T  50515558 tttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaacaccaccaaa 50515623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 359
Target Start/End: Complemental strand, 44713405 - 44713052
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    ||||||||||||||||||||  |||||||||||| |||||||||   ||||||||| |||||||||       |||||||||||||||||||||||||||    
T  44713405 ggttaacatcatcattttcggttgaatgcaaaggtaatgtgtat---ataaacctttccccattcgttttttaggcgatttccttttgatcacgtcatat 44713309  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||| | | ||| ||| | |  |||| | |||  |||||||| ||||||| || ||| || ||||   ||||||  | |||||||||||||||    
T  44713308 gatctgtactgtacctttccggactatgcaatctggactagattcatgcattccggagttagaaattaggactgcaccagtacaaaaactgtgttcattt 44713209  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| | ||| | |||||||  | |||||||||  ||||||||||| |||   |||||| | ||| | ||||||||| ||||||||| ||| |    
T  44713208 tctgactatgcct-gcattgttttcagatatggttgttccggttgatgccccaaatgttgatccacatgagattcaacctcctaatgtgttgccacttat 44713110  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccacca 359  Q
    |||||||||||||| |||||||| ||| ||||||| ||| | ||||||||||||||||    
T  44713109 tttacttgaagatgtgcatgattacggtaatgccatatctgagaatcccccaccacca 44713052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 45910717 - 45910520
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    ||||| |||||||||||| ||||||||||||||| ||||| |||||||   ||||| ||||||||        || |||||||||||||||| |||||||    
T  45910717 ggttagcatcatcatttttgactgaatgcaaaggtaatgtatatataa---acctttccccattcattttttaggtgatttccttttgatcatgtcatat 45910621  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||||| ||||| | | ||| ||| | |  |||||| |||| |||||||||||| ||| |||||| || ||||   ||||||  |||||||||||||||||    
T  45910620 gatctgtactgtacctttccggactatgcaatccggactggattcatgcgttctggagttcgaaattcggactgcaccagtacagaaactgtgttcattt 45910521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 16768066 - 16768021
Alignment:
Q  5 ttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataa 50  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  16768066 ttaacatcatcattctcgactgaatgcaaaggtaatgtgtatataa 16768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 10548339 - 10548379
Alignment:
Q  4 gttaacatcatcattttcgactgaatgcaaaggaaatgtgt 44  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  10548339 gttaacatcatcattttcgactgaatgcaaaggtaatgtgt 10548379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 6851424 - 6851381
Alignment:
Q  7 aacatcatcattttcgactgaatgcaaaggaaatgtgtatataa 50  Q
    |||||||||||||||| |||| |||||||| |||||||||||||    
T  6851424 aacatcatcattttcgtctgactgcaaaggtaatgtgtatataa 6851381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 4 - 367
Target Start/End: Complemental strand, 13851022 - 13850662
Alignment:
Q  4 gttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatatg 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||  | | ||||||||||||       ||||||||||||||||||||||||||||    
T  13851022 gttaacatcatcattttcgactgaatgcaaaggtaatgtgtatataa--acctttcccccattcgttttta-ggcgatttccttttgatcacgtcatatg 13850926  T
Q  104 atctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt 203  Q
    || | ||||| | | ||| ||| | |  |||||| |||| |||||||  ||||||| |||| | |  ||||   ||||||  ||||||||||||||||||    
T  13850925 atttgtactgtacctttccggactatgcaatccgcactggattcatggtttccggagttcgtaatccggactgcaccagtacagaaactgtgttcatttt 13850826  T
Q  204 -tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttctt 302  Q
     ||||| ||| | ||| | |||| ||  | |||||||||  ||||||||||| |||   |||||||| ||| | ||||||||| ||||||||||||||||    
T  13850825 ctgactatgcat-gcattgtttttagatatggttgttccagttgatgccccaaatgttgatccacctgagatttaacctcctaatgtgttgccgcttctt 13850727  T
Q  303 ttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||    
T  13850726 ttacttgaagatgcgcatgatttcggtaatgccaaatccgagaatcccccaccaccaccaccaaa 13850662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 3 - 359
Target Start/End: Original strand, 25761168 - 25761521
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||   ||||| |||||||         ||| |||| ||||||||||||||||||    
T  25761168 ggttaacatcatcatttttgactgaatgcaaaggtaatgtgtatataa---acctttccccattgattttttaggctattttcttttgatcacgtcatat 25761264  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||| | ||||| | | ||| ||| | |  |||||  |||| |||||||||||||||| |||||| |  ||||   ||||||  | |||||||||||||||    
T  25761265 gatatgtactgtacctttccggactatgcaatccagactggattcatgcgttccggagttcgaaatccggactgcaccagtacaaaaactgtgttcattt 25761364  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| | ||||| |||||||  | |||||||||  ||||||||||| |||   |||||||| ||| ||||||||||| || ||| ||||||||    
T  25761365 tctgactatgcct-gcactgttttcagatatggttgttccggttgatgccccaaatgttgatccacctgagattgaacctcctaatgcgtttccgcttct 25761463  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccacca 359  Q
    |||||||||||||||||||| |||||| ||||||||||| | | ||||||||||||||    
T  25761464 tttacttgaagatgcgcatggttccggtaatgccaaatctgagtatcccccaccacca 25761521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 364
Target Start/End: Original strand, 38965578 - 38965934
Alignment:
Q  5 ttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatatga 104  Q
    |||||||||||||||||| |||||| |||| | |||||||||||||   ||||||| |||||||       |||||||| |||||||||| |||||||||    
T  38965578 ttaacatcatcattttcgtctgaattcaaatgtaatgtgtatataa---accttcctccattcgttttttaggcgattttcttttgatcatgtcatatga 38965674  T
Q  105 tctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcatttt- 203  Q
    | | ||||||   |||| ||||    || |||| ||| ||||||||| ||| |||||||||| |  |||| | ||||||  ||||||||||||||||||     
T  38965675 tatgtactgact-gttccggaaaacgaattccggactacattcatgcattctggatttcgaaatccggactacaccagtacagaaactgtgttcattttc 38965773  T
Q  204 tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttcttt 303  Q
    ||||| ||||| |||||  ||||| | | |||||||||  ||||||||||| ||||  ||||| || ||| ||||| ||||||  |||||||| ||||||    
T  38965774 tgactatgcttggcactgatttcaattatggttgttccggttgatgccccaaatgatgatccagctgagattgaacatcctatcatgttgccggttcttt 38965873  T
Q  304 tacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacacc 364  Q
    |||||||||||| |||||||||| ||| ||||||||||| ||||||||||| |||| ||||    
T  38965874 tacttgaagatgtgcatgattccagaattgccaaatccgagaatcccccactaccaccacc 38965934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 367
Target Start/End: Complemental strand, 20236481 - 20236122
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||   ||||||||| ||| |       |||||||||||||||||||||||||||    
T  20236481 ggttaacatcatcattttcgactgaatgctaaggtaatgtgtatataa---accttccccgatttgttttta-ggcgatttccttttgatcacgtcatat 20236386  T
Q  103 gatctatactgaaacgttctggaatttcaaatccgaactgcattcatgcgttccggatttcgaattttggacaaaaccagtgtagaaactgtgttcattt 202  Q
    ||| | || |     | || ||| ||| |||||||||||| ||||||||||||||||||||||| |  ||||   ||||||  | ||| | |||||||||    
T  20236385 gatatgtaatcttcagatccggactttgaaatccgaactggattcatgcgttccggatttcgaaatccggactgcaccagtacataaattatgttcattt 20236286  T
Q  203 t-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcctattgtgttgccgcttct 301  Q
    | ||||| ||| | ||||| |||||||  | | ||| |||  ||||||||||| |||   |||||||  | | || | |||||| ||||| || ||||||    
T  20236285 tctgactatgcct-gcactgttttcagatatg-ttgctccggttgatgccccaaatgttaatccaccagatattggatctcctaatgtgtcgcggcttct 20236188  T
Q  302 tttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    |||||||||||||||| || ||||||| |||||||||| || |||||||||||||||| |||||||    
T  20236187 tttacttgaagatgcgtattattccggtaatgccaaatacgagaatcccccaccaccatcaccaaa 20236122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 367
Target Start/End: Complemental strand, 34834024 - 34833843
Alignment:
Q  186 agaaactgtgttcatttt-tgactctgcttcgcactattttcagtcaaggttgttcctcttgatgccccacatgagtatccacctcagaatgaacctcct 284  Q
    |||||||||||||||||| ||||| | | | ||||| |||||||  | |||||||||  ||||||||||| ||    ||| |||| ||| ||||||||||    
T  34834024 agaaactgtgttcattttctgactatacat-gcactgttttcagatatggttgttccgattgatgccccaaattttgatctacctaagattgaacctcct 34833926  T
Q  285 attgtgttgccgcttcttttacttgaagatgcgcatgattccggaaatgccaaatccgtgaatcccccaccaccaacaccaaa 367  Q
    | || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  34833925 aatgcgttgctgcttcttttacttgaagatgcgcatgattccggtaatgccaaatccgagaatcccccaccaccaccaccaaa 34833843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 23352297 - 23352198
Alignment:
Q  3 ggttaacatcatcattttcgactgaatgcaaaggaaatgtgtatataataaaccttcccccattcgnnnnnnnggcgatttccttttgatcacgtcatat 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||   ||||||||| |||||||||       ||| |||||||||||||||||||||||    
T  23352297 ggttaacatcatcattttcgactgaatgcaaaggtaatgtgtat---ataaacctttccccattcgttttttaggcaatttccttttgatcacgtcatat 23352201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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