View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_56 (Length: 360)

Name: NF6868A_low_56
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_56
NF6868A_low_56
[»] chr8 (1 HSPs)
chr8 (2-360)||(45305708-45306059)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 45306059 - 45305708
Alignment:
Q  2 caaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaagagaacaataaatgagtgatgagg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45306059 caaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaagagaacaataaatgagtgatgagg 45305960  T
Q  102 ctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattccacgctnnnnnnnnnnnnnnnnctt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||    
T  45305959 ctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattccacgct--tctctctctccctcctt 45305862  T
Q  202 aaagcctagtcaacctcatctctatcttttgtcccatattcatccaacaatattattccattctctctccctctcttgcaattcatgtgacctagaagaa 301  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||    
T  45305861 aaagcctagtcaacctcatctc-atcttttgtcccatattcatccaacaatattataccattct------ctctcttgcaattcatgtgacctagaagaa 45305769  T
Q  302 gagttcattctattcagtcatcaatctcc--ctccccaactaattaacaatggttatggtt 360  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  45305768 gagttcattctattcagtcatcaatctccatctcctcaactaattaacaatggttatggtt 45305708  T

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