View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_60 (Length: 354)

Name: NF6868A_low_60
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_60
NF6868A_low_60
[»] chr3 (5 HSPs)
chr3 (15-354)||(36280769-36281110)
chr3 (17-301)||(6820626-6820907)
chr3 (17-296)||(7129924-7130206)
chr3 (254-289)||(48352158-48352193)
chr3 (241-290)||(26955807-26955856)
[»] chr8 (2 HSPs)
chr8 (19-350)||(33178050-33178381)
chr8 (234-291)||(15038747-15038804)
[»] chr4 (2 HSPs)
chr4 (21-150)||(1072477-1072606)
chr4 (227-296)||(1072686-1072755)
[»] chr1 (3 HSPs)
chr1 (239-354)||(16305298-16305411)
chr1 (254-289)||(48710362-48710397)
chr1 (254-290)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (254-289)||(27515880-27515915)
chr5 (254-290)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (234-299)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 36281110 - 36280769
Alignment:
Q  15 taggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatagtgagtggctgagagataatattagttggaagatgtgtgatggga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  36281110 taggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataaaattagttggaagatgtgtgatggga 36281011  T
Q  115 attctactttgtttttgttagattcctgattggatgatatgtccctgagatac--ttatagaagattatacgagttagctgatataaattgacaaatgta 212  Q
    ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  36281010 attttactttgtttttgttagatccctgattggatgatatgcccctgagatacacttatagaagattatacgagttagctgatataaattgacaaatgta 36280911  T
Q  213 gagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgt 312  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  36280910 gagaatgtgttcattatggggtggggagtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaagagttggtgagagagagtgtgt 36280811  T
Q  313 tgggcggttaattccaatggttttacaggttggatcagttga 354  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  36280810 tgggcggctaactccaatggttttacaggttggatcagttga 36280769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 6820626 - 6820907
Alignment:
Q  17 ggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatagtgagtggctgagagataatattagttggaagatgtgtgatgggaat 116  Q
    |||||| ||||| | |||||||||||||  |||||| |||||||||| ||       |||| |||||||||| ||||||| |||  || ||||||||||     
T  6820626 ggtgtgatggcatattatgagaagtatctaagagggtgtgggtcaggcgg-------gtggttgagagataacattagttagaacgtgggtgatgggaac 6820718  T
Q  117 tctactttgtttttgttagattcctgatt-ggatgatatgtccctgag--atacttatagaagattatacgagttagctgata-taaattgacaaatgta 212  Q
    |||||| |||||| ||||||| | || || ||||| | || || ||||  ||| ||||||||||||||| ||||||||||| | ||||||| ||| ||||    
T  6820719 tctactctgttttggttagatccttggtttggatggtttgcccttgagggatagttatagaagattatatgagttagctgacaataaattggcaactgta 6820818  T
Q  213 gagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgag 301  Q
    |||||| |||||| ||   | ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  6820819 gagaatatgttcactacatgatggggagtgaacggtgaggagtggaagtagcgtatgaggttatttgcttggaaggaagagttggtgag 6820907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 7130206 - 7129924
Alignment:
Q  17 ggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatagtgagtggctgagagataatattagttggaagatgtgtgatgggaat 116  Q
    ||||||| |||||||||||| |||||| ||| ||||||||||||||||||||  || |||| |||||||||| ||||||  |||  || |||||| || |    
T  7130206 ggtgtggcggcagactatgaaaagtataagaaagggcgtgggtcaggtggatgttgggtggttgagagataacattagtcagaacgtgggtgatgcgact 7130107  T
Q  117 tctactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgat-ataaattgacaaatgtag 213  Q
    |||||| |||||| ||||||| |||| |||| || ||||  |||||  || | || | |||||||||| |||||||| ||| | |||||| ||| |||||    
T  7130106 tctactatgttttggttagatccctggttgggtggtatgctcctgaaggagagttttggaagattatatgagttagcggataaaaaattggcaattgtag 7130007  T
Q  214 agaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 296  Q
    || || |||| ||||| |||||||| | ||| ||||||  ||| |||||| |||||||||| ||| ||||||||||| |||||    
T  7130006 agcatatgtttattatagggtggggagagaatggtgaggcgtgtaagtggtgtaggaggttgttttcttgggaggaagagttg 7129924  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 48352158 - 48352193
Alignment:
Q  254 gtggaagtggcgtaggaggttatttgcttgggagga 289  Q
    |||||||||||| |||||||||||||||||||||||    
T  48352158 gtggaagtggcggaggaggttatttgcttgggagga 48352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 26955856 - 26955807
Alignment:
Q  241 tgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaa 290  Q
    |||| ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  26955856 tgaatggtgagacgtgaaagtggcgtaagaggttgtttgcttgggaggaa 26955807  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 33178381 - 33178050
Alignment:
Q  19 tgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatagtgagtggctgagagataatattagttggaagatgtgtgatgggaattc 118  Q
    |||||||||||| ||| |||| ||| |||||||  ||||| || |||||| | | |||| | || |||||||||||  ||||| || | ||||| || ||    
T  33178381 tgtggtggcagagtataagaaatattagagaggaggtgggacaagtggatggagggtggttaagggataatattagccggaaggtgggggatggaaactc 33178282  T
Q  119 tactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgatataaattgacaaatgtagaga 216  Q
    |||| |||||| | ||||| | || ||||||| |||| | ||||  |||  || |  |||||| ||||||||| |||  |||| ||||||| ||| | |     
T  33178281 tactctgttttgggtagatccgtggttggatggtatgcctctgaaggattgttttcaaagattttacgagttaactgcaataagttgacaactgtggtgg 33178182  T
Q  217 atgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttggg 316  Q
    || ||||   ||||||||||||| |||| || |||  |||||||||||||  |||||| || |||||||||||| |||||||||| |||  ||||| |||    
T  33178181 atatgttttctatggggtgggggctgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggag--tgtgtaggg 33178084  T
Q  317 cggttaattccaatggttttacaggttggatcag 350  Q
    ||  ||| |||| | |||||||||||||||||||    
T  33178083 cgtctaactccagttgttttacaggttggatcag 33178050  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 15038804 - 15038747
Alignment:
Q  234 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaa 291  Q
    ||||| ||||||||||||  |||||||||| |||||| ||| ||||||||||||||||    
T  15038804 tggggagtgaacggtgagccgtggaagtggtgtaggacgttgtttgcttgggaggaaa 15038747  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 1072477 - 1072606
Alignment:
Q  21 tggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatagtgagtggctgagagataatattagttggaagatgtgtgatgggaattcta 120  Q
    ||||||||||||||||||| ||| |||||||| || || || |||||| | | ||| |||||||||||||||||| ||||| || || ||| ||||| ||    
T  1072477 tggtggcagactatgagaaatattagagagggagtaggacacgtggatggagggtgactgagagataatattagtcggaaggtgggtaatgagaatttta 1072576  T
Q  121 ctttgtttttgttagattcctgattggatg 150  Q
    ||||||||| |||||||  ||| |||||||    
T  1072577 ctttgttttggttagatctctggttggatg 1072606  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 1072686 - 1072755
Alignment:
Q  227 tatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 296  Q
    |||||||||||| ||||| ||||||  ||| ||||| |||||||||||| | | |||||||||| |||||    
T  1072686 tatggggtggggtgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaagagttg 1072755  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 16305411 - 16305298
Alignment:
Q  239 ggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttac 338  Q
    |||||| ||||||  |||||||| | ||||||||||||| |||||||||||| ||||| |||| |||  |||||| ||| | ||| |  | ||||||| |    
T  16305411 ggtgaatggtgaggtgtggaagttgtgtaggaggttattcgcttgggaggaagagttgctgagggag--tgtgttaggcagctaacttgagtggttttgc 16305314  T
Q  339 aggttggatcagttga 354  Q
    |||||||| |||||||    
T  16305313 aggttggaacagttga 16305298  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 48710397 - 48710362
Alignment:
Q  254 gtggaagtggcgtaggaggttatttgcttgggagga 289  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48710397 gtggaagtggcgtaggaggttatttgcgtgggagga 48710362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 13217011 - 13216975
Alignment:
Q  254 gtggaagtggcgtaggaggttatttgcttgggaggaa 290  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13217011 gtggaagtggagtaggaggttattagcttgggaggaa 13216975  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 27515915 - 27515880
Alignment:
Q  254 gtggaagtggcgtaggaggttatttgcttgggagga 289  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27515915 gtggaagtggcgtaggaggttatttgcgtgggagga 27515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 42918027 - 42918063
Alignment:
Q  254 gtggaagtggcgtaggaggttatttgcttgggaggaa 290  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  42918027 gtggaaatggcggaggaggttatttgcttgggaggaa 42918063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 2845488 - 2845423
Alignment:
Q  234 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtg 299  Q
    ||||| ||||||||||||| | |||||||||| ||||| || |||||||| || || |||||||||    
T  2845488 tggggagtgaacggtgagacgaggaagtggcgaaggagattgtttgcttgagatgagaagttggtg 2845423  T

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