View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_61 (Length: 353)

Name: NF6868A_low_61
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_61
NF6868A_low_61
[»] chr7 (5 HSPs)
chr7 (1-352)||(45341211-45341560)
chr7 (137-277)||(4548267-4548409)
chr7 (108-292)||(6011403-6011586)
chr7 (216-279)||(11622442-11622506)
chr7 (136-224)||(19432388-19432474)
[»] chr3 (4 HSPs)
chr3 (72-282)||(19800545-19800754)
chr3 (1-65)||(14258960-14259023)
chr3 (72-223)||(16018989-16019136)
chr3 (161-220)||(25387029-25387088)
[»] chr8 (7 HSPs)
chr8 (72-293)||(24819942-24820160)
chr8 (70-224)||(15061971-15062124)
chr8 (137-289)||(15662802-15662954)
chr8 (74-216)||(16723492-16723632)
chr8 (126-243)||(15550776-15550892)
chr8 (1-61)||(15061824-15061884)
chr8 (174-295)||(22502004-22502125)
[»] chr4 (5 HSPs)
chr4 (72-238)||(16673431-16673597)
chr4 (110-290)||(18448904-18449084)
chr4 (1-70)||(16673668-16673737)
chr4 (1-65)||(41806064-41806127)
chr4 (137-186)||(13933031-13933079)
[»] scaffold0035 (1 HSPs)
scaffold0035 (70-288)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (75-281)||(24134-24339)
[»] scaffold0338 (1 HSPs)
scaffold0338 (70-223)||(18545-18696)
[»] chr5 (2 HSPs)
chr5 (70-237)||(26058031-26058196)
chr5 (110-223)||(19079584-19079696)
[»] chr6 (5 HSPs)
chr6 (70-284)||(13123109-13123323)
chr6 (75-281)||(12331737-12331940)
chr6 (72-222)||(23846137-23846286)
chr6 (75-154)||(20891709-20891788)
chr6 (1-65)||(15483019-15483083)
[»] scaffold0001 (1 HSPs)
scaffold0001 (306-351)||(420420-420465)
[»] chr2 (2 HSPs)
chr2 (110-243)||(28579640-28579771)
chr2 (70-124)||(16592297-16592351)
[»] scaffold0086 (1 HSPs)
scaffold0086 (138-220)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 45341211 - 45341560
Alignment:
Q  1 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacc 100  Q
    ||||||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45341211 aatatctaaaatctcatacataaataaaaaacaattc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaact 45341308  T
Q  101 tgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341309 tgcacgtcgtctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaa 45341408  T
Q  201 atagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341409 atagcattcaaggatttcaagtatcacatatacacatgttcatcatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatca 45341508  T
Q  301 attttcatttcaacatcaagaggtcatcacatcaccaacaattaaattcatg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341509 attttcatttcaacatcaagaggtcatcacatcaccaacaattaaattcatg 45341560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 4548267 - 4548409
Alignment:
Q  137 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacat----ata 232  Q
    |||||||||||||||| ||| |||||| | ||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||  |||| ||    |||    
T  4548267 cggtcaaccaaacgactatt-aggggtgagataatattccacataatacaatataatcaaagaaa-agcattcaaggatttcaatcatcatatatagata 4548364  T
Q  233 cacatgttcattatcccataatactaacatcatgtgaatattatc 277  Q
     ||||| ||| ||||| |||||||| |||||||||||||||||||    
T  4548365 tacatgctcaatatcctataatactgacatcatgtgaatattatc 4548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 292
Target Start/End: Complemental strand, 6011586 - 6011403
Alignment:
Q  108 catctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcat 207  Q
    |||||||||||||| || |||||| ||  |||||||||||||||| | |||||||||| ||| || ||||||||| || |||||| || ||| ||| |||    
T  6011586 catctacaccatttttagaaatggtgaggcggtcaaccaaacgacaactgaggggttagataata-ttcacataaaaagatataagcatagatataacat 6011488  T
Q  208 tcaaggatttcaagtatcacatatacacatgttcattatcccat-aatactaacatcatgtgaatattatcttaaaatcaatcata 292  Q
    || | || ||||  ||||||||| | |||| ||||| || || | |||||||||||| | ||||||| ||||| ||  ||||||||    
T  6011487 tctacga-ttcacatatcacatacatacatattcatcattccttgaatactaacatcttatgaatatcatcttcaatccaatcata 6011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 11622506 - 11622442
Alignment:
Q  216 ttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt 279  Q
    ||||||||||||||||| |||||||||| | ||| | |||||||||||||| | |||||||||||    
T  11622506 ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcatataaatattatctt 11622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 19432474 - 19432388
Alignment:
Q  136 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 224  Q
    ||||||||||||||||| |  | || |||| ||| |||| || ||||||||||||||||||  ||||||||||||| ||||||||||||    
T  19432474 acggtcaaccaaacgactac-gtggagttagataatattccatataataaaatataatcaat-aaatagcattcaatgatttcaagtat 19432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 19800545 - 19800754
Alignment:
Q  72 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 171  Q
    |||||| ||||||||| | |||||||||||||||||| | ||||||||| |||||||||||||  | ||||||||||| |||| ||  |||| | ||| |    
T  19800545 agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacaccatt-ataaaaatggcgaggcagtcaaccaaacaaccactggtgggtgagataat 19800643  T
Q  172 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 271  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||| | ||||||| ||||||| ||||    
T  19800644 attccacataataaaatctaatcaaagaaatagcattcaaggatttcaaataccacatatatacatgctcatcatcctagaatactatcatcatgcgaat 19800743  T
Q  272 attatcttaaa 282  Q
    |||||| ||||    
T  19800744 attatcataaa 19800754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14258960 - 14259023
Alignment:
Q  1 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 65  Q
    ||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||| |||||    
T  14258960 aatatctcaaatctcatacataa-tagacaacaagtctcatcaataatataaatacataacataa 14259023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 16019136 - 16018989
Alignment:
Q  72 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 171  Q
    ||||||||||| ||| | |||||||||| |||||||| || |||||||||||| ||||||  |   ||||||||||| ||||||||  || ||| ||| |    
T  16019136 agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgggtaggtggtcaaccaaatgaccattg-tggtttatataat 16019038  T
Q  172 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 223  Q
    ||| || ||||||||| ||   || | |||||||||||||||||||||||||    
T  16019037 attccatataataaaacat--gcata-aaatagcattcaaggatttcaagta 16018989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 25387088 - 25387029
Alignment:
Q  161 ggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 220  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  25387088 ggttaaataacatttcacataataaaatataataaaggaaataacattcaaagatttcaa 25387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 293
Target Start/End: Complemental strand, 24820160 - 24819942
Alignment:
Q  72 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 171  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||| | | ||| |||| ||| |    
T  24820160 agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatggtgaggcggtcaaccaaacgacaact-aggagttagataat 24820063  T
Q  172 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 271  Q
    ||| |||||| ||||||| || || | |||||| |||||||||||||||  |||||||||| ||||| |||| |||| | |||||||||||| | |||||    
T  24820062 attccacatagtaaaataaaagcaca-aaatagaattcaaggatttcaaacatcacatatatacatgctcatcatcctagaatactaacatcgtatgaat 24819964  T
Q  272 attatcttaaaatcaatcataa 293  Q
    ||| || |||||||||| ||||    
T  24819963 attgtcataaaatcaatgataa 24819942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 224
Target Start/End: Original strand, 15061971 - 15062124
Alignment:
Q  70 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 169  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||  ||||| |||    
T  15061971 caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactga-aggttagata 15062069  T
Q  170 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 224  Q
     |||| |||||||||||||||||||||  ||||  || |||||||||||||||||    
T  15062070 atattccacataataaaatataatcaagtaaatgacagtcaaggatttcaagtat 15062124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 289
Target Start/End: Complemental strand, 15662954 - 15662802
Alignment:
Q  137 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacaca 236  Q
    |||||||||||||||||| |  ||||||| ||| |||| ||||||| || ||| || || | ||||||||||| ||  |||||||||||||||||| |||    
T  15662954 cggtcaaccaaacgaccactagggggttagataatatt-cacataaaaagatacaagcacaaaaatagcattctagattttcaagtatcacatatataca 15662856  T
Q  237 tgttcatta-tcccataatactaacatcatgtgaatattatcttaaaatcaatc 289  Q
    || ||| || ||| | |||||||||||| | ||||||||||||| || ||||||    
T  15662855 tgctcaatattcctagaatactaacatcgtatgaatattatcttcaattcaatc 15662802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 16723492 - 16723632
Alignment:
Q  74 cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtat 173  Q
    ||||||||||||||||| ||||||  ||||||||  ||||||||||| ||| ||||||  |  |||| || |||||||||| |||  ||||| ||| |||    
T  16723492 cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgggtaggcggtaaatcaaacgaccaatga--ggttagataatat 16723589  T
Q  174 ttcacataataaaatataatcaaagaaatagcattcaaggatt 216  Q
    |||| || |||||||| |||||||| ||||| |||||| ||||    
T  16723590 ttcatatgataaaataaaatcaaagtaatagaattcaatgatt 16723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 15550892 - 15550776
Alignment:
Q  126 aaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatc 225  Q
    |||||| || || |||||||||||||||| | || ||||| ||| |||| ||||||| || ||||||||| | ||||||||||| |  |||||||| |||    
T  15550892 aaatggtgagacagtcaaccaaacgaccactaagaggttatataatatt-cacataaaaatatataatcacaaaaatagcattctataatttcaagaatc 15550794  T
Q  226 acatatacacatgttcat 243  Q
    ||||||| ||||| ||||    
T  15550793 acatatatacatgctcat 15550776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15061824 - 15061884
Alignment:
Q  1 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagc 61  Q
    |||||||||||| ||| ||||||||| ||| ||||||||  |||||| |||||||||||||    
T  15061824 aatatctcaaatttcagacataaatagacagcaagtctcatcaataaaataaatacatagc 15061884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 22502125 - 22502004
Alignment:
Q  174 ttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaata 272  Q
    ||||||||| || |||||| || | | ||| ||||| |||||| ||| ||||||||||| ||||| |||| || || | ||||||| |||||  ||||||    
T  22502125 ttcacataaaaatatataagcacaaatataacattctaggatt-caaatatcacatatatacatgctcatcattcctagaatactaccatcacatgaata 22502027  T
Q  273 ttatcttaaaatcaatcataaca 295  Q
    ||||||| || ||||||||||||    
T  22502026 ttatctttaattcaatcataaca 22502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 16673597 - 16673431
Alignment:
Q  72 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 171  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||| || |||| | ||   | ||||||||||||||| || |  |||| ||| |    
T  16673597 agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccatttttagaaatagtgaggtgctcaaccaaacgaccactgggatgttagataat 16673498  T
Q  172 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatg 238  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16673497 attccacataataaaatttaatcaaagaaatagcattcaaggatttcaagtatcaaatatatacatg 16673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 290
Target Start/End: Original strand, 18448904 - 18449084
Alignment:
Q  110 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 209  Q
    |||||||||||| || |||||| ||  |||||||| ||||||||| |  ||||||| ||| |||| ||||||| ||  ||||| || | || |||||||     
T  18448904 tctacaccatttttataaatggtgaggcggtcaactaaacgaccactagggggttagataatatt-cacataaaaacgtataagcacaaaagtagcatta 18449002  T
Q  210 aaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaatattatcttaaaatcaatca 290  Q
     || ||||||||||||||||||  |||||  || ||| |  | |||||||||||||||||||||||||||| || |||||||    
T  18449003 tagaatttcaagtatcacatatttacatgcacaatattcttacaatactaacatcatgtgaatattatcttcaactcaatca 18449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16673737 - 16673668
Alignment:
Q  1 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtccc 70  Q
    |||||||||||||| | ||||||||||||||||||| |  ||||||| ||||||||| | ||||||||||    
T  16673737 aatatctcaaatcttagacataaataaacaacaagttttagcaataacataaatacacaacataagtccc 16673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41806064 - 41806127
Alignment:
Q  1 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 65  Q
    |||||||||||||||| |||||| || | |||||||||||||| |||||||||| ||||||||||    
T  41806064 aatatctcaaatctcagacataa-tagataacaagtctcggcagtaatataaatgcatagcataa 41806127  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 13933031 - 13933079
Alignment:
Q  137 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaa 186  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||||||    
T  13933031 cggtcaaccaaacgaccactg-ggggttagataatatttcacataataaa 13933079  T

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Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 288
Target Start/End: Complemental strand, 71437 - 71223
Alignment:
Q  70 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 169  Q
    ||||||||||||||||||| |||||  | | |||||  | |||||| |||||||| ||||||  |  |||||||||||||||||| |||||| ||| |||    
T  71437 caagcactcacaagcaataagaacttgatcatgcacaccgtctacaacatttatacaaatgggtaggcggtcaaccaaacgaccagtgaggg-ttagata 71339  T
Q  170 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtga 269  Q
     |||| |||||||||| ||||||||||||||   ||||||||| ||||||||||| ||||| | |||| ||||| |||| | ||||||||||||||| ||    
T  71338 atattccacataataagatataatcaaagaa---gcattcaagaatttcaagtattacatacatacatattcatcatcctagaatactaacatcatgcga 71242  T
Q  270 atattatcttaaaatcaat 288  Q
    |||||||| |||| |||||    
T  71241 atattatcctaaactcaat 71223  T

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Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 281
Target Start/End: Complemental strand, 24339 - 24134
Alignment:
Q  75 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 174  Q
    |||||||| ||||| |  ||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||||| ||| |||  |||    
T  24339 actcacaaacaataagttctcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactgaggg-ttagataacatt 24241  T
Q  175 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 273  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  || ||| |||| ||||| | ||| | ||||||||||||||||||||||    
T  24240 tcacataataaaatataatcata-aaataacattcaaggatttcaagtatagcacatatacatattcatcactcctagaatactaacatcatgtgaatat 24142  T
Q  274 tatcttaa 281  Q
    ||||||||    
T  24141 tatcttaa 24134  T

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Target: scaffold0338 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 18696 - 18545
Alignment:
Q  70 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 169  Q
    |||||||||||||| |||| |||||||| | |||||| | | ||||||||| ||| ||||||  | ||||||||||||||||||| ||| |||||| |||    
T  18696 caagcactcacaagaaataagaactcaatcatgcacgccgtttacaccattcatacaaatgggtagacggtcaaccaaacgaccactga-gggttagata 18598  T
Q  170 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 223  Q
     |||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  18597 atattccacataataaaatataatcata-aaacagcattcaaggatttcaagta 18545  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 26058031 - 26058196
Alignment:
Q  70 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 169  Q
    |||||||| | |||||||| |||||||| | |||||  | ||||||||||||||| ||||||  |  || ||||||||| ||||| | |||||||| |||    
T  26058031 caagcacttataagcaataagaactcaatcatgcactccgtctacaccatttatacaaatgggtaggcgatcaaccaaatgaccact-aggggttagata 26058129  T
Q  170 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacat 237  Q
     |||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | | ||||||||    
T  26058130 atattccacataataaaatataatcata-aaatatcattcaaggatttcaagtattatacatacacat 26058196  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 19079696 - 19079584
Alignment:
Q  110 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 209  Q
    |||||||||||| ||||||||| ||  ||||||||||||| |||| || | ||||| |||  | ||||||||| || |||||| || ||||||||||||     
T  19079696 tctacaccatttttaaaaatggtgagccggtcaaccaaacaaccactgggaggttagataaca-ttcacataaaaagatataagcacagaaatagcatta 19079598  T
Q  210 aaggatttcaagta 223  Q
     ||||||| |||||    
T  19079597 taggatttaaagta 19079584  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 284
Target Start/End: Complemental strand, 13123323 - 13123109
Alignment:
Q  70 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 169  Q
    ||||||||||||||||||| ||| ||||   |||||| | ||||||||||| ||| ||||||  || ||| ||| ||||||| || ||| |||||| ||     
T  13123323 caagcactcacaagcaataagaaatcaattttgcacgccgtctacaccattcatacaaatgggtaagcggccaatcaaacgatcactga-gggttagatt 13123225  T
Q  170 gtatttcacataataaaatataatc-aaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgt 267  Q
     || ||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||  ||| ||  ||||| |||| | ||  | ||||||||||| ||||    
T  13123224 ata-ttcacgtaataaaatataatcaaaataaatagcattcaatgatttcaattaatacacatgtacatgctcatcattcgtaaaatactaacataatgt 13123126  T
Q  268 gaatattatcttaaaat 284  Q
    |||||||||||| ||||    
T  13123125 gaatattatcttcaaat 13123109  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 281
Target Start/End: Complemental strand, 12331940 - 12331737
Alignment:
Q  75 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 174  Q
    |||||||||||||| ||||| || | | || ||| ||||||||||| ||| ||||||  |  |||||||| ||||||||| |  ||||||| ||  ||||    
T  12331940 actcacaagcaataagaacttaatcatacatgtcgtctacaccattcatacaaatgggtaggcggtcaactaaacgaccact--ggggttagattatatt 12331843  T
Q  175 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 273  Q
     ||||||||||||||||| || | |||||| |||| |||||||  |||||  || ||| |||| ||||| | ||| | |||||||||||||| |||||||    
T  12331842 ccacataataaaatataaacata-aaatagaattctaggattt-tagtatagcacatatacatattcatcactcctagaatactaacatcatatgaatat 12331745  T
Q  274 tatcttaa 281  Q
    ||||||||    
T  12331744 tatcttaa 12331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 23846286 - 23846137
Alignment:
Q  72 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 171  Q
    ||||||||||| ||||| ||| |||||| |||| |  ||||||||||||| | ||||| |  |  |||| ||||||||||||| ||  |||| | ||| |    
T  23846286 agcactcacaatcaataagaaatcaaacatgcatgctatctacaccattttttaaaatagtaatgcggttaaccaaacgaccactggagggtgagataat 23846187  T
Q  172 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagt 222  Q
    ||||||||| ||||||||||| || | ||||| |||||| |||||||||||    
T  23846186 atttcacatgataaaatataaacata-aaataacattcatggatttcaagt 23846137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 20891709 - 20891788
Alignment:
Q  75 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgacca 154  Q
    |||||||||||||| ||| |||| | |||||| | ||||||||||| ||| ||||||  |  ||||||||||||||||||    
T  20891709 actcacaagcaataagaaatcaatcatgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgacca 20891788  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15483083 - 15483019
Alignment:
Q  1 aatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 65  Q
    |||||||||||||||| |||||| || |||| ||||||| |||  || ||||||||||| |||||    
T  15483083 aatatctcaaatctcaaacataactagacaataagtctcagcagcaacataaatacataacataa 15483019  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 420420 - 420465
Alignment:
Q  306 catttcaacatcaagaggtcatcacatcaccaacaattaaattcat 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  420420 catttcaacatcaagaggtcatcacatcaccaataattaaattcat 420465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 28579771 - 28579640
Alignment:
Q  110 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 209  Q
    ||||||| |||| || |||||| || | |||||||||||||||||||| ||||||| ||| || |||||| || || |||||| || | | ||||||||     
T  28579771 tctacactatttttacaaatggagagatggtcaaccaaacgaccattgtggggttagataata-ttcacacaaaaagatataagcacaaatatagcattt 28579673  T
Q  210 aaggatttcaagtatcacatatacacatgttcat 243  Q
     |||| ||||| ||||||||||| ||||| ||||    
T  28579672 tagga-ttcaaatatcacatatatacatgctcat 28579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
Q  70 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata 124  Q
    ||||||||||| ||||||| |||||||| |||||||| | ||| |||||||||||    
T  16592351 caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata 16592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 11379 - 11300
Alignment:
Q  138 ggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 220  Q
    |||||||||||||| || || |||||||||||||||| |||| ||| ||| ||||||||| ||| || |||||||||||||||    
T  11379 ggtcaaccaaacgatcactg-ggggttaaatagtattccacacaat-aaacataatcaaataaa-agtattcaaggatttcaa 11300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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