View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_65 (Length: 350)
Name: NF6868A_low_65
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_65 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 10141735 - 10142079
Alignment:
| Q |
8 |
atgagatggacatcaaatgatagggaagatggaatacaagtaacatcttacaagcattgtttggtttaaaacaaaaggacaaagttcaagtactgtccaa |
107 |
Q |
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| T |
10141735 |
atgagatggacatgatatgatagggaagatggaatacaagtaacatcttacaagcattgtttggtttaaaacaaaaggacaaagttcaagtactgtccaa |
10141834 |
T |
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| Q |
108 |
gtttgacacaa--ctttattcttattcatacatttgttttgtttcatttacaaatcacaagcaaccagaatcagaatcaggtgcatgattcttaaccctt |
205 |
Q |
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| T |
10141835 |
gtttgacacacagctttattcttattcatacatttgttttgtgtcatttacaaatcacaagcaaccagaatcagaatcaggtgcatgattcttaaccctt |
10141934 |
T |
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| Q |
206 |
ttaattaagtcaagaacctttcgaacaagttcccaaagaagaagcttactctagcccatcctcgagacgtttctggtgctttggtgttggctggtacctt |
305 |
Q |
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| T |
10141935 |
ttaattaagtcaagaacctttcgaacaagttcccaaagaagaagcttactctagcccatcctcgagacgtttctggtgctttggtgttggctggtacctt |
10142034 |
T |
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| Q |
306 |
cttcacattgaccatcacagtctggccgatttctttacgcagtgc |
350 |
Q |
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| T |
10142035 |
cttcacattgaccatcacagtctggccgatttctttacgcagtgc |
10142079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 10135316 - 10135288
Alignment:
| Q |
89 |
aagttcaagtactgtccaagtttgacaca |
117 |
Q |
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| T |
10135316 |
aagttcaagtactgtccaagtttgacaca |
10135288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 40685101 - 40685042
Alignment:
| Q |
210 |
ttaagtcaagaacctttcgaacaagttcccaaagaagaagcttactctagcccatcctcg |
269 |
Q |
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| T |
40685101 |
ttaagccaagaacctttccaacaagttaccaaagaagaagctagttttagcccatcctcg |
40685042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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