View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_66 (Length: 346)
Name: NF6868A_low_66
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 6915634 - 6915730
Alignment:
| Q |
114 |
gctggtcaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttc |
210 |
Q |
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| T |
6915634 |
gctggccaaatagttgctgtatttggtgttgattgtgcatccagcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttc |
6915730 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 15041880 - 15041840
Alignment:
| Q |
114 |
gctggtcaaatagttgctgtatttggtgttgattgtgcatc |
154 |
Q |
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| T |
15041880 |
gctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 15040345 - 15040294
Alignment:
| Q |
159 |
gatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttc |
210 |
Q |
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| T |
15040345 |
gatacttttactgatgggtctgttaaatatacaatgacttcaatgagtgttc |
15040294 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 35856863 - 35856932
Alignment:
| Q |
114 |
gctggtcaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggtta |
183 |
Q |
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| T |
35856863 |
gctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta |
35856932 |
T |
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