View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_7 (Length: 523)
Name: NF6868A_low_7
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 23 - 418
Target Start/End: Complemental strand, 6455274 - 6454879
Alignment:
| Q |
23 |
aaggtgaagagccttcgtgtctcattgatttctggatgcaggatactttacgagagattgaagaatcgaagctaaacggagtaacagtgccaccgttctc |
122 |
Q |
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| T |
6455274 |
aaggtgaagagccttcgtgtctcattgatttctggatgcaggatactttaagagagattgaagaatcgaagctgaacggagtaacagtgccaccgttctc |
6455175 |
T |
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| Q |
123 |
caccaacgctgaaatcggtggttatctcttcgatttcctcttcgcagcacaagacgcgtcgacttcgtcgcttctttgggcggtgacattgctggattcg |
222 |
Q |
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| T |
6455174 |
caccaacgctgaaatcggtggttatctcttcgatttcctcttcgcagcacaagacgcgtcgacttcgtcgcttctttgggcggtgacattgctggattcg |
6455075 |
T |
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| Q |
223 |
catccagaggttctcgccagagtgagagaagaagttgccggaatctggtcgccggagtcgaatacactgataacatcggagcagttaagggatatgaagt |
322 |
Q |
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| T |
6455074 |
catccagaggttctcgccagagtgagagaagaagtcgccggaatctggtcgccggagtcgaatacactgataacatcggagcagttaagggagatgaagt |
6454975 |
T |
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| Q |
323 |
acacgcaagcggtggcgcgtgaggttattcgttaccgaccaccagcgactttggtgccgcatgttgcggcagagccgtttccgttgacggaatctt |
418 |
Q |
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| T |
6454974 |
acacgcaagcggtggcgcgtgaggttattcgttaccgaccaccagcgactttggtgccgcatgttgcggcagagccgtttccgttgacggaatctt |
6454879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 419 - 511
Target Start/End: Original strand, 6457904 - 6457996
Alignment:
| Q |
419 |
tctttgcattttctggtacaattgcaaaaacaaaattttcacctttatttataaatcgttgaatactgattcgtctaaacccaatttgatatt |
511 |
Q |
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| T |
6457904 |
tctttgcattttctcgtacaattgcaaaaacaaaattttcacctttatttgtgaatcgttgaatactgatttgtctaaacccaatttgatatt |
6457996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 419 - 511
Target Start/End: Original strand, 2183615 - 2183706
Alignment:
| Q |
419 |
tctttgcattttctggtacaattgcaaaaacaaaattttcacctttatttataaatcgttgaatactgattcgtctaaacccaatttgatatt |
511 |
Q |
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| T |
2183615 |
tctttgcattttctggtacaattgcaaaa-caaaattttcacctttatttgtgaatcgttgaatactgattcatctaaacccaatttgatatt |
2183706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 419 - 511
Target Start/End: Complemental strand, 45413513 - 45413422
Alignment:
| Q |
419 |
tctttgcattttctggtacaattgcaaaaacaaaattttcacctttatttataaatcgttgaatactgattcgtctaaacccaatttgatatt |
511 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||| | |||||||||| |||||||| | |||| ||||||||||||| |
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| T |
45413513 |
tctttgcattttctggtaaaattgcaaaa-caaaattttcacctttatttgtgaatcgttgaacactgattcatttaaatccaatttgatatt |
45413422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 517
Target Start/End: Original strand, 6768580 - 6768677
Alignment:
| Q |
419 |
tctttgcattttctggtacaattgcaaaaacaaaattttcacctttatttataaatcgttgaatactgattcgtctaaacccaatttgatattcttcga |
517 |
Q |
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|||||||||||||||||| | |||||||| |||||||||||||||||||| | |||||||||| |||||||| ||||||||||| |||||||| ||||| |
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| T |
6768580 |
tctttgcattttctggtaaatttgcaaaa-caaaattttcacctttatttgtgaatcgttgaacactgattcatctaaacccaaattgatattattcga |
6768677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 511
Target Start/End: Original strand, 31734690 - 31734774
Alignment:
| Q |
425 |
cattttctggtacaattgcaaaaacaaaattttcacctttatttataaatcgttgaatactgattcgtctaaacccaatttgatatt |
511 |
Q |
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|||||| |||||||||||||||| ||||||||||||| || ||| | |||| ||| |||||||||| |||||||||||||||||||| |
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| T |
31734690 |
cattttttggtacaattgcaaaa-caaaattttcaccatt-tttgtgaatctttggatactgattcatctaaacccaatttgatatt |
31734774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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