View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_74 (Length: 331)
Name: NF6868A_low_74
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 45671840 - 45671518
Alignment:
| Q |
1 |
tcatcatgtcatggctgccagtgctgttgaacttcttactgacttggtcaaggctttacaggcagtcaatgctactgcatggcacaatgcttttttaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45671840 |
tcatcatgtcatggctgccagtgctgttgaacttcttactgacttggtcaaggctttacaggcagtcaatgctactgcatggcacaatgcttttttaggt |
45671741 |
T |
|
| Q |
101 |
ttatggtttgctgccctgcgactcgttcaaagggtaagaaatactaactt----cagccaattgattaactcaaatatgttctggttgctcatttatgtg |
196 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45671740 |
ttatggtttgctgccctgcggctcgttcaacgggtaagaaatactaacttgtttcagccaattgattaactcaaatctgttctggttgctcatttatgtg |
45671641 |
T |
|
| Q |
197 |
ccagacactgcattgtccacgagcttacaaatgtgtaacatgtggtcaaatgcagattttttagccataaaaattaaagaaaatatagcatgtcaattta |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45671640 |
ccagacactgcattgtccacgagcttacaaatgtgtaacatgtggtcaaatgcagattttttagccataaaaattaaagaaaatatagcatgtcaattta |
45671541 |
T |
|
| Q |
297 |
ccttctttgtaagcttgcatatt |
319 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
45671540 |
ccttctttgtaagcttgcatatt |
45671518 |
T |
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