View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_77 (Length: 324)

Name: NF6868A_low_77
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_77
NF6868A_low_77
[»] chr3 (10 HSPs)
chr3 (140-303)||(6255374-6255536)
chr3 (73-145)||(6139069-6139141)
chr3 (73-145)||(6164384-6164456)
chr3 (214-299)||(6858809-6858894)
chr3 (73-145)||(13282954-13283031)
chr3 (135-296)||(8572515-8572683)
chr3 (234-303)||(6412773-6412842)
chr3 (234-303)||(6595221-6595290)
chr3 (234-303)||(6726069-6726138)
chr3 (234-303)||(7747393-7747462)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 140 - 303
Target Start/End: Complemental strand, 6255536 - 6255374
Alignment:
Q  140 aaacaatgcaaggtgaccttcatatattccacaacataaatttgaacattcatctcttaaaattccaggctgatagtgttctatcactccaaaggacaag 239  Q
    |||| ||||||||||||||||||||||||||  ||||| || | ||| |||||||| |||||||||||| ||||||   |||||||||||||  ||||||    
T  6255536 aaacgatgcaaggtgaccttcatatattcca--acatatatatcaac-ttcatctcctaaaattccaggttgatagcagtctatcactccaacagacaag 6255440  T
Q  240 caaacaatcattttcttttttaaacttgtttttatga--ttatatcgctgcagtagatttgttgct 303  Q
    ||||||||||||||||| |||||||||||||||||||   ||||| |||||| |||||||||||||    
T  6255439 caaacaatcattttcttctttaaacttgtttttatgactatatattgctgcaatagatttgttgct 6255374  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 6139141 - 6139069
Alignment:
Q  73 cccatccatcttcctgtcttgttgattatttcacttcataaaccttgaaatctatgtcctaataatgaaacaa 145  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||    
T  6139141 cccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaa 6139069  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 6164456 - 6164384
Alignment:
Q  73 cccatccatcttcctgtcttgttgattatttcacttcataaaccttgaaatctatgtcctaataatgaaacaa 145  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  6164456 cccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaa 6164384  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 6858809 - 6858894
Alignment:
Q  214 agtgttctatcactccaaaggacaagcaaacaatcattttcttttttaaacttgtttttatgattatatcgctgcagtagatttgt 299  Q
    |||| ||| |||||||||   ||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||    
T  6858809 agtggtctgtcactccaacaaacaagtaaacaatcattttcttctttaaacttgtatttatgactatatcgctgcaatagatttgt 6858894  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 13282954 - 13283031
Alignment:
Q  73 cccatccatcttcctgtcttgttgatta-----tttcacttcataaaccttgaaatctatgtcctaataatgaaacaa 145  Q
    ||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||| ||||||||| ||||||    
T  13282954 cccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataataaaacaa 13283031  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 296
Target Start/End: Original strand, 8572515 - 8572683
Alignment:
Q  135 taatgaaacaatgcaaggtgaccttcatatattccacaacataaatttgaacattcatctcttaaaattccaggctgata---------gtgttctatca 225  Q
    |||||||||||||||||| ||  ||   ||||||||  ||||| || |||||||||||||| |||| |||||||| ||||         ||| |||||||    
T  8572515 taatgaaacaatgcaaggggaatttttcatattcca--acatatatatgaacattcatctcctaaatttccaggcggatacagaaaagagtggtctatca 8572612  T
Q  226 ctccaaaggacaagcaaacaatcattttcttttttaaacttgtttttatgattatatcgctgcagtagatt 296  Q
    |||||   |||||||||||||||||| |||| ||||||||||| ||| ||| |||||||||||| ||||||    
T  8572613 ctccagcagacaagcaaacaatcattctcttctttaaacttgtatttgtgactatatcgctgcaatagatt 8572683  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 6412773 - 6412842
Alignment:
Q  234 gacaagcaaacaatcattttcttttttaaacttgtttttatgattatatcgctgcagtagatttgttgct 303  Q
    ||||||||||||||||| ||||| |||||||||||  || ||| |||||||||||| |||||| ||||||    
T  6412773 gacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaatagattagttgct 6412842  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 6595221 - 6595290
Alignment:
Q  234 gacaagcaaacaatcattttcttttttaaacttgtttttatgattatatcgctgcagtagatttgttgct 303  Q
    ||||||||||||||||| ||||| |||||||||||  || ||| |||||||||||| |||||| ||||||    
T  6595221 gacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaatagattagttgct 6595290  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 6726069 - 6726138
Alignment:
Q  234 gacaagcaaacaatcattttcttttttaaacttgtttttatgattatatcgctgcagtagatttgttgct 303  Q
    ||||||||||||||||| ||||| |||||||||||  || ||| |||||||||||| |||||| ||||||    
T  6726069 gacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaatagattagttgct 6726138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 7747462 - 7747393
Alignment:
Q  234 gacaagcaaacaatcattttcttttttaaacttgtttttatgattatatcgctgcagtagatttgttgct 303  Q
    |||||||||||||||| ||||||  |||||||||| |||| || ||||||  |||| |||||| ||||||    
T  7747462 gacaagcaaacaatcagtttcttcgttaaacttgtatttacgactatatcaatgcaatagattagttgct 7747393  T

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