View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6868A_low_80 (Length: 322)
Name: NF6868A_low_80
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_80 |
 | |
|
| [»] scaffold0618 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 13960319 - 13960622
Alignment:
| Q |
13 |
agagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960319 |
agagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcc |
13960418 |
T |
|
| Q |
113 |
caacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960419 |
caacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaa |
13960518 |
T |
|
| Q |
213 |
aaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatccgacagctcaagtggctttgttttccaaagttgtcatttcacaggtgc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960519 |
aaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatctgacagctcaagtggctttgttttccaaagttgtcatttcacaggtgc |
13960618 |
T |
|
| Q |
313 |
acta |
316 |
Q |
| |
|
|||| |
|
|
| T |
13960619 |
acta |
13960622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 13967491 - 13967674
Alignment:
| Q |
21 |
atcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtca |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| ||| ||||||| ||||| || |||| ||||| ||||||| || | ||||||||||||| |
|
|
| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtca |
13967590 |
T |
|
| Q |
121 |
attctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaat |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | | | || |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13967591 |
attctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaactaat |
13967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 49871189 - 49870992
Alignment:
| Q |
20 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
119 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||| | ||||||||||| |||| | |||||||||| ||||||| | | ||||| || | | |
|
|
| T |
49871189 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
49871090 |
T |
|
| Q |
120 |
aattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
217 |
Q |
| |
|
|||||||||| ||||||| ||| | || ||||||||| | ||| ||||| || ||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
49871089 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatcgttagaaaacca |
49870992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 49865249 - 49865135
Alignment:
| Q |
23 |
caagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaat |
122 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||| | ||||||||||| ||||| || |||||||||| ||||||| | | ||||| || | |||| |
|
|
| T |
49865249 |
caagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaat |
49865150 |
T |
|
| Q |
123 |
tctaccgtgactgca |
137 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
49865149 |
tctaccgcgactgca |
49865135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 6835 - 6875
Alignment:
| Q |
116 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
156 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
6835 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
6875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 44067770 - 44067730
Alignment:
| Q |
116 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
156 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
44067770 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44067730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 44087534 - 44087574
Alignment:
| Q |
116 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
156 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
44087534 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44087574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 44093076 - 44093036
Alignment:
| Q |
116 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
156 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
44093076 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44093036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University