View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_82 (Length: 321)

Name: NF6868A_low_82
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_82
NF6868A_low_82
[»] chr7 (8 HSPs)
chr7 (141-321)||(19216898-19217078)
chr7 (143-321)||(41256156-41256334)
chr7 (5-133)||(19217144-19217272)
chr7 (141-321)||(15891755-15891923)
chr7 (5-128)||(41255960-41256083)
chr7 (7-133)||(15891989-15892115)
chr7 (31-101)||(25010997-25011067)
chr7 (145-225)||(25011169-25011249)
[»] chr1 (8 HSPs)
chr1 (141-321)||(50516659-50516837)
chr1 (141-321)||(33803090-33803270)
chr1 (141-321)||(44711783-44711963)
chr1 (5-133)||(50516905-50517033)
chr1 (5-133)||(33803336-33803464)
chr1 (5-133)||(44711589-44711717)
chr1 (5-133)||(45909347-45909475)
chr1 (23-102)||(10549314-10549393)
[»] chr8 (7 HSPs)
chr8 (141-321)||(9139253-9139433)
chr8 (141-303)||(23254524-23254686)
chr8 (141-321)||(755418-755598)
chr8 (141-321)||(23709217-23709398)
chr8 (5-133)||(9139059-9139187)
chr8 (5-133)||(23254752-23254880)
chr8 (7-133)||(755664-755784)
[»] chr5 (8 HSPs)
chr5 (141-321)||(20235344-20235524)
chr5 (141-321)||(34832613-34832793)
chr5 (5-133)||(20235150-20235278)
chr5 (5-122)||(25761720-25761837)
chr5 (5-128)||(34832419-34832542)
chr5 (7-133)||(38966535-38966661)
chr5 (142-284)||(31049121-31049263)
chr5 (142-284)||(31044466-31044608)
[»] chr2 (13 HSPs)
chr2 (141-321)||(17311190-17311370)
chr2 (141-321)||(38621246-38621426)
chr2 (141-319)||(30213249-30213427)
chr2 (141-321)||(23937670-23937850)
chr2 (5-133)||(30213493-30213621)
chr2 (5-133)||(29809921-29810049)
chr2 (5-128)||(17310996-17311119)
chr2 (5-132)||(38621493-38621620)
chr2 (222-321)||(29809714-29809813)
chr2 (23-133)||(10925749-10925859)
chr2 (40-133)||(23937510-23937603)
chr2 (153-284)||(10925540-10925671)
chr2 (141-180)||(29809816-29809855)
[»] chr3 (4 HSPs)
chr3 (141-321)||(52971133-52971313)
chr3 (144-321)||(6160744-6160921)
chr3 (5-133)||(52970939-52971067)
chr3 (5-92)||(48094747-48094834)
[»] chr6 (1 HSPs)
chr6 (159-263)||(24131885-24131989)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 19217078 - 19216898
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  19217078 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaatcgggtccaattatcaatgtatgcttcctccgtttcgg 19216979  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  19216978 agtccacaatatccatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 19216898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 143 - 321
Target Start/End: Original strand, 41256156 - 41256334
Alignment:
Q  143 caaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggag 242  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  41256156 caaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttaaaccgggtccaattatcaatatatgtttcctccgtgtcggag 41256255  T
Q  243 tccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    |||||||||| || |||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||    
T  41256256 tccacaatatacatccatgcagccatcacaattttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 41256334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 19217272 - 19217144
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||||| |    
T  19217272 atgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaaatactttttcaa 19217173  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | || |||||||||||||| |||||||||    
T  19217172 ccgaacgtgtgcagattcaactctgtttg 19217144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 15891923 - 15891755
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||| ||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||     
T  15891923 tccaaaattgtcttttcaacataatccaaaaacttagggaattttgcgcatacaactttgaaccgggtccaattatcaatatacgcttcctccatttcga 15891824  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||| ||||||||            |||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||    
T  15891823 agtgcacaatat------------ccatcacagtcttcacaaccaaagcaggcttgatcgcttccccattcttgcctttga 15891755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 41255960 - 41256083
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||  |    
T  41255960 atgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacccatactactactcaggtactttttaaa 41256059  T
Q  105 ctgagcgtgtgcagattcagctct 128  Q
    |  |||||||||||||||||||||    
T  41256060 cgaagcgtgtgcagattcagctct 41256083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 15892115 - 15891989
Alignment:
Q  7 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 106  Q
    ||||||||||||||  ||||||||||||||||||| | |||||||||||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  15892115 gaagcatgtattgcggtatgttgcaactctagcatctcatgaacggatttccagtttgtacttaaatcacccatactactactcagatactttttcaacc 15892016  T
Q  107 gagcgtgtgcagattcagctctgtttg 133  Q
     |||||||| |||||||  ||||||||    
T  15892015 tagcgtgtgtagattcaattctgtttg 15891989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 25010997 - 25011067
Alignment:
Q  31 aactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatacttttt 101  Q
    ||||||| |||||| ||||| ||||  ||||||||||| |||| || ||| |||||| |||||||||||||    
T  25010997 aactctaacatgttgtgaacagatttccagtttgtacttaaattactcatactactaatcagatacttttt 25011067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 25011169 - 25011249
Alignment:
Q  145 aaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatg 225  Q
    |||||||  ||| |||||||||||||||| | ||||| ||  |||||| | ||||||||||| | ||| ||||||||||||    
T  25011169 aaattgtagtttcaacatattccaaaaacataggaaacttgtcgcatacagctttgaaccggttgcaattatcaatatatg 25011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 50516837 - 50516659
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||| ||||    
T  50516837 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattat--atatatgcttcctccgtgtcgg 50516740  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  50516739 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgcctttga 50516659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 33803270 - 33803090
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  33803270 tccaaaattgtcttttcaacatattccaaaaatttggaaaattttgtgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccgtttcgg 33803171  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  33803170 agtccacaatatccatccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgcttgcccattcttgcctttga 33803090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 44711783 - 44711963
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  44711783 tccaaaattgtcttttcaacatattccaaaaattaggtaaattttgcgtatagaactttgaatcgggtccaattatcaatatatgcttcctccgtgtcgg 44711882  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44711883 agtccacaatatccgtccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttgcccattcttgcctttga 44711963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 50517033 - 50516905
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  50517033 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttttcaa 50516934  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | || ||||||||||||||||| ||||||    
T  50516933 ccgatcgtgtgcagattcagctatgtttg 50516905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 33803464 - 33803336
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||  |||||| ||||||||| |||||| |||||||||| | |||||||| |    
T  33803464 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacagatttccagtttttactcaaatcacccatactactactcaaacactttttcaa 33803365  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | ||||||| |||||||||||||||||||    
T  33803364 ccgagcgtgcgcagattcagctctgtttg 33803336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 44711589 - 44711717
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    |||||||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  44711589 atgaagcatgtattgtggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaattacccatactactactcaggtactttttcaa 44711688  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | ||||| ||||||||||| || ||||||    
T  44711689 ccgagcgagtgcagattcaactttgtttg 44711717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 45909347 - 45909475
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||| |||||| |||  |||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||| ||||||||||| ||| ||||| |    
T  45909347 atgaaacatgtactgcggtatgttgcaactctagcatgttattaacagattgccagtttgtactcaaatcacccatactactactcaggtaccttttcaa 45909446  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | |||||||||||||||||||||||||||    
T  45909447 ccgagcgtgtgcagattcagctctgtttg 45909475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 10549393 - 10549314
Alignment:
Q  23 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttc 102  Q
    ||||||| | |||||||||||| ||||||||||  ||||||||||| |||| || ||| |||||| |||||| |||||||    
T  10549393 tatgttgtagctctagcatgttgtgaacggattcccagtttgtacttaaatcactcatactactagtcagatgctttttc 10549314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 9139253 - 9139433
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||| |||| ||||||||||||||    
T  9139253 tccaaaattgtcttttcaacatattccaaaaacttggaaaattttgcgcatagaactttgaaccgagtccaatcatcaatgtatgcttcctccgtttcgg 9139352  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  9139353 agtccacaatatctatccatgcagccatcacagtcttcaccaccgaaccaggcttaatcgctttcccattcttgcctttga 9139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 141 - 303
Target Start/End: Complemental strand, 23254686 - 23254524
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  23254686 tccaaaattatcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatgtatgcttcctccttttcgg 23254587  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgctt 303  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  23254586 agtccacaatatccatccatgcagccgtcacagtcttcaccaccgaaccaggcttaatcgctt 23254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 755598 - 755418
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||| |||| |||||| |||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||||||||||    
T  755598 tccaaaattgtcttttcaacataatccagaaacttaggaaattttgcgcatacatctttgaaccgagtccaattatcaatatatgcttcctccgtttcgg 755499  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||  ||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||||||    
T  755498 agtccacaatatccaaccagacagccatcacaattttcaccaccgaagcaggcttaatcgattccccattattgcctttga 755418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 23709217 - 23709398
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    ||||| |||||||||| || ||| ||||||||||| ||||||||  |||||| |||||||||    |||||| |||||||||||| ||||||||||||||    
T  23709217 tccaacattgtcttttcaaaataatccaaaaacttaggaaatttcccgcatacaactttgaattttgtccaattatcaatatatgcttcctccgtttcgg 23709316  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttca-ccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    | ||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |||||||||||||||||    
T  23709317 actcctcaatatccatccatgcagccatcacagtcttcacccacagaggcaggcttgatcgcttccccattcttgcctttga 23709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 9139059 - 9139187
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||| |||||||||| |||||||||| |    
T  9139059 atgaaacatgtattgcggtatgttgcaactctagcatgttatgaacagattgccagtttgtactcaaatcactcatactactactcaaatactttttcaa 9139158  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
      ||||||||||| ||||| |||||||||    
T  9139159 tcgagcgtgtgcacattcaactctgtttg 9139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 23254880 - 23254752
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||| ||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||| | | || |||||||||| ||||||| || |    
T  23254880 atgaagcatgttttgcggtatgatgcaactctagcatgttatgaacggattgccagtttgtactcaaatcatctatactactactcaaatactttctcaa 23254781  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
      |||||| | ||||||||||||||||||    
T  23254780 tcgagcgtctacagattcagctctgtttg 23254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 755784 - 755664
Alignment:
Q  7 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 106  Q
    |||||||||||| |  |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||      |||| || ||||||||| ||     
T  755784 gaagcatgtattacggtatgttgcaactatagcatgtcatgaacggatttgcagtttgtactcaaataaccca------tacttaggtactttttcaacc 755691  T
Q  107 gagcgtgtgcagattcagctctgtttg 133  Q
    |||||||||||||||||||||| ||||    
T  755690 gagcgtgtgcagattcagctctatttg 755664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 20235344 - 20235524
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  20235344 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgtatagaactttgaaccgggtccaattatcaatgtatgctttctccgtttcgg 20235443  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  20235444 agtccacaatatccatccatgcagccatgacagtcttcaccactgaaccaggcttaatcgcttgcccattcttgcctttga 20235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 34832613 - 34832793
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||    
T  34832613 tccaaaattttcttttcaacatattccaaaaactcgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgtttcctctgtgtcgg 34832712  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| ||||  ||||||||||||||||    
T  34832713 agtccacaatatccatccatgcagccatcacagtctacaccaccgacgcatgcttaattgcttgtccattcttgcctttga 34832793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 20235150 - 20235278
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||  |||||||||  ||||||||| |    
T  20235150 atgaagcatgtattgcggtatgtttcaactctagtatgttatgaacggattgccagtttgtactcaaatcacccatattactactcaattactttttcaa 20235249  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    |||||||||||||||||||||||||||||    
T  20235250 ctgagcgtgtgcagattcagctctgtttg 20235278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 25761837 - 25761720
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  ||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  25761837 atgaagcatgtattgcggtattttgcaactctaccatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttttcaa 25761738  T
Q  105 ctgagcgtgtgcagattc 122  Q
    | ||||||||||||||||    
T  25761737 ccgagcgtgtgcagattc 25761720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 34832419 - 34832542
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||  ||||||||| |    
T  34832419 atgaagcatgtattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatctcccatactactactcaagtactttttcaa 34832518  T
Q  105 ctgagcgtgtgcagattcagctct 128  Q
       |||||||| ||||||||||||    
T  34832519 acaagcgtgtgaagattcagctct 34832542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 38966661 - 38966535
Alignment:
Q  7 gaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgact 106  Q
    |||||||||||| |  ||||||||||||||||||||| |||||||| ||  ||||||||||| |||| |||||| ||||||||||||||||||||| ||     
T  38966661 gaagcatgtattacggtatgttgcaactctagcatgtcatgaacggctttccagtttgtactaaaatcacccatactactactcagatactttttcaacc 38966562  T
Q  107 gagcgtgtgcagattcagctctgtttg 133  Q
    ||||||||||| |||||||||| ||||    
T  38966561 gagcgtgtgcatattcagctctatttg 38966535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 31049121 - 31049263
Alignment:
Q  142 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 241  Q
    |||||||| | |||| |||||||| || |||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || || ||    
T  31049121 ccaaaattttattttcaacatatttcacaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaga 31049220  T
Q  242 gtccacaatatccacccatgcagccatcacagtcttcaccacc 284  Q
     | ||| |||||| |||||||| |||| || ||||||||||||    
T  31049221 attcacgatatcctcccatgcaaccataaccgtcttcaccacc 31049263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 31044466 - 31044608
Alignment:
Q  142 ccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgga 241  Q
    |||||||| | |||| |||||||| ||||||||| ||||||||   ||||| ||||||||||||| | ||| |||||| ||||| || ||| || ||  |    
T  31044466 ccaaaattatattttcaacatatttcaaaaacttaggaaatttgtggcatacaactttgaaccggttgcaattatcaacatatgcttgctctgtatcaaa 31044565  T
Q  242 gtccacaatatccacccatgcagccatcacagtcttcaccacc 284  Q
     | ||| |||||| |||||||| |||| || || |||||||||    
T  31044566 attcacgatatcctcccatgcaaccataaccgttttcaccacc 31044608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 17311190 - 17311370
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  17311190 tccaaaattgtcttttcaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccggttccaattatcaatgtatgcttcctccgtttcgg 17311289  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||    
T  17311290 agtccacaatatccatccatgcatccatcacagtcttcaccaccgaaccaggcttaatcgcttgccaattcttgtctttga 17311370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 141 - 321
Target Start/End: Complemental strand, 38621426 - 38621246
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  | ||||    
T  38621426 tccaaaattgtcttttcaacatattcctataacttgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctctatgtcgg 38621327  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  38621326 agtccacaatatccatccatgcagccatcacagtcttcaccaccgacgcatgcttaatcgcttgcccattcttgcctttga 38621246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 30213427 - 30213249
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| | ||    
T  30213427 tccaaaattgtcttttcaacatattccaaaaacatgggaaattttgcgcatagaactttgaaccgggtccaattatcaatatatgcttcctacgtgttgg 30213328  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgccttt 319  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||    
T  30213327 agtccacagtatccatccatgcagccatcatagtcttcaccaccgacgcaggcttaatcgcttgcccattcttgccttt 30213249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 23937670 - 23937850
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||| ||||||||| | | |||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||    
T  23937670 tccaaaattgtcttttcaacataatccaaaaacatagaaaattttgcgcatacaactttgaactgggtccaattatcaatatatgcttcctccgtttcgg 23937769  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||| ||| |||||||||||||    
T  23937770 agtccacaatatccaaccatgcagccatcacaatcttcaccaccaaagcaggcttgatcgcttcccccttcttgcctttga 23937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 30213621 - 30213493
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  30213621 atgaagcatgtattgcagtatgttgcaactctaccatgttatgaacagattgccagtttgtactcaaatcacccatactactactcaggtactttttcaa 30213522  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | |||||||||||||||||||||||||||    
T  30213521 ccgagcgtgtgcagattcagctctgtttg 30213493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 29810049 - 29809921
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||| |    
T  29810049 atgaatcatgtattgcggtatgttgcaactttagcatgttatgaacggatttccagtttgtactcaaatgacccatactactactcaaatactttttcaa 29809950  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | |||||||||||||||||||||||||||    
T  29809949 cagagcgtgtgcagattcagctctgtttg 29809921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 17310996 - 17311119
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||| |||||||||| |||||||||| |    
T  17310996 atgaagcatgtattgcggtatgttgcaactctagaatgttatgaacggattgctagtttgtactcaaatcacccatactactactcaaatactttttcaa 17311095  T
Q  105 ctgagcgtgtgcagattcagctct 128  Q
    | ||||||||||||||||||||||    
T  17311096 ccgagcgtgtgcagattcagctct 17311119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 38621620 - 38621493
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||| || |    
T  38621620 atgaagcatttattgcggtatgttgcaactctagcatgttatgaacggattgccagtttgtactcaaatcacccatactactactcaggtactttctcaa 38621521  T
Q  105 ctgagcgtgtgcagattcagctctgttt 132  Q
    | ||| ||||||||||||||||||||||    
T  38621520 ccgagtgtgtgcagattcagctctgttt 38621493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 321
Target Start/End: Complemental strand, 29809813 - 29809714
Alignment:
Q  222 tatgattcctccgtttcggagtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  29809813 tatgcttcctccgtttcggagtccacaatatccacccatgcagccatcacaatcttcaccaccgaaccaggcttaatcgctttcccatttttgcctttga 29809714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 10925859 - 10925749
Alignment:
Q  23 tatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattc 122  Q
    |||||||  ||||||||||||| |||||||| |  ||||||||||| |||| |||||  ||||||  |||||||||||||||| |    ||||||||||     
T  10925859 tatgttgtgactctagcatgttgtgaacggagttccagtttgtacttaaatcacccacactactagccagatactttttcgaccggttatgtgcagattt 10925760  T
Q  123 agctctgtttg 133  Q
    |||||||||||    
T  10925759 agctctgtttg 10925749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 23937510 - 23937603
Alignment:
Q  40 atgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcgactgagcgtgtgcagattcagctctgtttg 133  Q
    |||| ||||| |||||| ||||||||||| | || | |||| |||||| |||||||||||||| || ||| ||||||||||||  |||||||||    
T  23937510 atgtcatgaatggattgtcagtttgtacttagatcatccatactactattcagatactttttcaaccgagtgtgtgcagattcgactctgtttg 23937603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 10925671 - 10925540
Alignment:
Q  153 ttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatat 252  Q
    |||| |||||||||||||||||| ||||||||   ||||| |||||||||  || | ||| |||||| ||||| || ||  || ||||| | ||| ||||    
T  10925671 ttttcaacatattccaaaaacttaggaaatttgttgcatacaactttgaataggttgcaattatcaacatatggttgctatgtatcggaattcacgatat 10925572  T
Q  253 ccacccatgcagccatcacagtcttcaccacc 284  Q
    || |||||||| ||| ||| ||||||||||||    
T  10925571 cctcccatgcaaccaccaccgtcttcaccacc 10925540  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 29809855 - 29809816
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaa 180  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  29809855 tccaaaattgtcttttcaacatattccaaaaacttgggaa 29809816  T

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Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 52971133 - 52971313
Alignment:
Q  141 tccaaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcgg 240  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||  ||||||||||| ||    
T  52971133 tccaaaattgtcttttcaacatatttcaaaaacttgggaaattttgcgcatataactttgaaccgggtccaattatcaatgtatacttcctccgttttgg 52971232  T
Q  241 agtccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  52971233 agtccacaatatccacccatgcagccatcatagtcttcaccaccgaaccaggcttaatcgctttctcattcttgcctttga 52971313  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 144 - 321
Target Start/End: Original strand, 6160744 - 6160921
Alignment:
Q  144 aaaattgtcttttaaacatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagt 243  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  6160744 aaaattgtcttttcaacataatccaaaaacttaggaaattttgtgcatacaactttgaaccgggtccaattatcaatatatgcttcctccatttcggagt 6160843  T
Q  244 ccacaatatccacccatgcagccatcacagtcttcaccaccgaagcaggcttaatcgcttacccattcttgcctttga 321  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  6160844 ccacaatatccatccatgcaaccatcacagtcttcaccaccgaagcacgcttaatcgcttgcccattcttgcctttga 6160921  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 52970939 - 52971067
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcagatactttttcga 104  Q
    ||||||||||||||||  |||||||||||||||||||||||  ||||||||  |||||||||||||||| |||||| |||||||||| || ||||||| |    
T  52970939 atgaagcatgtattgcggtatgttgcaactctagcatgttacaaacggatttccagtttgtactcaaatcacccatactactactcaaatgctttttcaa 52971038  T
Q  105 ctgagcgtgtgcagattcagctctgtttg 133  Q
    | |||||| ||||||||||||||||||||    
T  52971039 ccgagcgtctgcagattcagctctgtttg 52971067  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 48094834 - 48094747
Alignment:
Q  5 atgaagcatgtattgcaatatgttgcaactctagcatgttatgaacggattggcagtttgtactcaaatgacccatgctactactcag 92  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |||||||||||    
T  48094834 atgaagcatgtattgcggtatgttgcaactctagcatgttattaacggattgccagtttgtactcaaatcacctatactactactcag 48094747  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 24131885 - 24131989
Alignment:
Q  159 acatattccaaaaacttgggaaattttgcgcatagaactttgaaccgggtccaactatcaatatatgattcctccgtttcggagtccacaatatccaccc 258  Q
    |||||||||| ||||||| |  ||||| |||| | ||||||||||||| | ||| |||||| ||||| ||| ||| | || || |||||||||||| |||    
T  24131885 acatattccacaaacttgagccatttttcgcaaacaactttgaaccggctgcaattatcaacatatgtttcttccatatcagaatccacaatatcctccc 24131984  T
Q  259 atgca 263  Q
    |||||    
T  24131985 atgca 24131989  T

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