View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_83 (Length: 321)

Name: NF6868A_low_83
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_83
NF6868A_low_83
[»] chr5 (3 HSPs)
chr5 (2-320)||(28872947-28873267)
chr5 (14-258)||(9504175-9504419)
chr5 (90-134)||(3031645-3031689)
[»] chr2 (4 HSPs)
chr2 (14-258)||(45496416-45496660)
chr2 (14-258)||(45504158-45504402)
chr2 (21-258)||(21793853-21794090)
chr2 (16-258)||(5983962-5984203)
[»] chr6 (1 HSPs)
chr6 (14-258)||(7500732-7500976)
[»] chr4 (1 HSPs)
chr4 (14-258)||(16847231-16847475)
[»] scaffold0014 (1 HSPs)
scaffold0014 (15-238)||(61607-61830)
[»] chr8 (1 HSPs)
chr8 (18-238)||(15141887-15142110)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 28873267 - 28872947
Alignment:
Q  2 caaacaacacatattgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873267 caaacaacacatattgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagc 28873168  T
Q  102 acgaaggagacatgggatgcattggagaaattgcattctggggatggtaagttgaagaagat--gagacttcaagctttgagaagacaatatgaggtatt 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28873167 gcgaaggagacatgggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagagacttcaagctttgagaagacaatatgaggtatt 28873068  T
Q  200 gacaatggaagaagaagaaacagttagtcaatactttgagaaagtgattaatcttacaatggggtggggacgtgtatgatactaatatactatccgtacc 299  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28873067 gacaatggaagaagaagaaacagttagtcaatactttgataaagtgattaatcttacaatggggtgtggacgtgtatgatactaatatactatccgtacc 28872968  T
Q  300 catggatattcttcgacatcc 320  Q
    ||||| ||||| | |||||||    
T  28872967 catgggtattcattgacatcc 28872947  T

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Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 9504175 - 9504419
Alignment:
Q  14 attgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagaca 113  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||  ||||||||||    
T  9504175 attgaagaagaaagatggaaaagctctgttcttgatgcatcagagtgtaagcaatgagatctttgagaagatcatgcattatgaaagcgtgaaggagaca 9504274  T
Q  114 tgggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaag 213  Q
    |||||| |||| ||||||||| ||| ||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||| || ||||||||||||||||    
T  9504275 tgggatacattagagaaattgtattatggtgatggtaagttgaagaaggtgagacttcaacctttgagaagacagtatgaagtgttgacaatggaagaag 9504374  T
Q  214 aagaaacagttagtcaatactttgagaaagtgattaatcttacaa 258  Q
    ||||| | ||||||||||||||||| || ||||| ||||||||||    
T  9504375 aagaatctgttagtcaatactttgataaggtgatcaatcttacaa 9504419  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 3031645 - 3031689
Alignment:
Q  90 cattatgaaagcacgaaggagacatgggatgcattggagaaattg 134  Q
    |||||||||||  | || |||||||||||||||||||||||||||    
T  3031645 cattatgaaagtgcaaatgagacatgggatgcattggagaaattg 3031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 45496660 - 45496416
Alignment:
Q  14 attgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagaca 113  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| |||||    
T  45496660 attgaagaagaaagatggaaaagctctgttcttgatgcatcagagtgtaagcaatgagatctttgagaagatcatgcattatgaaagcgcgaagaagaca 45496561  T
Q  114 tgggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaag 213  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  45496560 tgggatgcattagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaag 45496461  T
Q  214 aagaaacagttagtcaatactttgagaaagtgattaatcttacaa 258  Q
    |||||   ||||||||||||||||| || ||||| ||||| ||||    
T  45496460 aagaatatgttagtcaatactttgataaggtgatcaatctaacaa 45496416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 45504402 - 45504158
Alignment:
Q  14 attgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagaca 113  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| |||||    
T  45504402 attgaagaagaaagatggaaaagctctgttcttgatgcatcagagtgtaagcaatgagatctttgagaagatcatgcattatgaaagcgcgaagaagaca 45504303  T
Q  114 tgggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaag 213  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  45504302 tgggatgcattagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaag 45504203  T
Q  214 aagaaacagttagtcaatactttgagaaagtgattaatcttacaa 258  Q
    |||||   ||||||||||||||||| || ||||| ||||| ||||    
T  45504202 aagaatatgttagtcaatactttgataaggtgatcaatctaacaa 45504158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 21794090 - 21793853
Alignment:
Q  21 aagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagacatgggatg 120  Q
    ||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| || |||||||||||||||    
T  21794090 aagaaagatggaaaagctttgttcttgatgcatcagagtgtaagcaatgagatctttgagaagatcatgcattatgaaagcgcgtaggagacatgggatg 21793991  T
Q  121 cattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaagaagaaac 220  Q
    |||| |||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||      
T  21793990 cattagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatt 21793891  T
Q  221 agttagtcaatactttgagaaagtgattaatcttacaa 258  Q
     ||||||||||||||||| || ||||| ||||||||||    
T  21793890 tgttagtcaatactttgataaggtgatcaatcttacaa 21793853  T

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Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 5983962 - 5984203
Alignment:
Q  16 tgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagacatg 115  Q
    |||||||||||||||| ||| || |||||||||||||| |||||||||| |||||||| |||||||||| ||| |||||||||||| ||||| |||||||    
T  5983962 tgaagaagaaagatggaaaagctttgttcttgatgcat-agagtgtaagcaatgagatctttgagaagaccatgcattatgaaagcgcgaagcagacatg 5984060  T
Q  116 ggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaagaa 215  Q
    ||||||| | |||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  5984061 ggatgcaatagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaa 5984160  T
Q  216 gaaacagttagtcaatactttgagaaagtgattaatcttacaa 258  Q
    ||| | ||||||||||||||||| || ||| | ||||||||||    
T  5984161 gaatctgttagtcaatactttgataaggtgctcaatcttacaa 5984203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 7500976 - 7500732
Alignment:
Q  14 attgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagaca 113  Q
    |||||||||||||||||| ||| || | ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||  |||||||||||    
T  7500976 attgaagaagaaagatggaaaagctctattcttgatgcatcagagtgtaagcaatgagatctttgagaagatcatgcattatgaaagtgcgaaggagaca 7500877  T
Q  114 tgggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaag 213  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||| |||    
T  7500876 tgggatgcattagagaaactgtattctggtgatggtaagttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaataag 7500777  T
Q  214 aagaaacagttagtcaatactttgagaaagtgattaatcttacaa 258  Q
    |||||   ||||||||||||||||| || ||||| ||||||||||    
T  7500776 aagaatttgttagtcaatactttgataaggtgatcaatcttacaa 7500732  T

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Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 16847475 - 16847231
Alignment:
Q  14 attgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagaca 113  Q
    ||||||||||||| |||| ||| || ||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||||||| |||||||||||    
T  16847475 attgaagaagaaaaatggaaaagctctgttcttgatgcatcagagtgtaagcaatgagatctttaagaagatcatgcattatgaaagcgcgaaggagaca 16847376  T
Q  114 tgggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaag 213  Q
    | ||||||||| |||||| |  ||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  16847375 ttggatgcattagagaaactatattctggtgatggtaaattgaagaaggtgagactgcaagctttgagaagacattatgaagtgttgacaatggaagaag 16847276  T
Q  214 aagaaacagttagtcaatactttgagaaagtgattaatcttacaa 258  Q
    |||||   ||||||||||||||||| || ||||| ||||||||||    
T  16847275 aagaatttgttagtcaatactttgataaggtgatcaatcttacaa 16847231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 61607 - 61830
Alignment:
Q  15 ttgaagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaagcacgaaggagacat 114  Q
    ||||||||||||||||| ||| || |||||||||||||||||| ||| || |||||||| |||||||||||||| |||||||||||  | ||||||| ||    
T  61607 ttgaagaagaaagatggtaaagctgtgttcttgatgcatcagaatgtgagcaatgagatctttgagaagatcatgcattatgaaagtgcaaaggagatat 61706  T
Q  115 gggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaaga 214  Q
    |||||||||||||||||||| ||  || |||||||||  |||| ||  |||| ||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  61707 gggatgcattggagaaattgtatgatgcggatggtaaactgaacaaagtgaggcttcaagctctgagaaggcaatatgaagtattgacaatggaagaaga 61806  T
Q  215 agaaacagttagtcaatactttga 238  Q
    ||||   |||||||||||||||||    
T  61807 agaatatgttagtcaatactttga 61830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 15142110 - 15141887
Alignment:
Q  18 aagaagaaagatgggaaaactatgttcttgatgcatcagagtgtaagaaatgagatgtttgagaagatcattcattatgaaag---cacgaaggagacat 114  Q
    |||||||||||||||||| | |||||||| |||||||||||||| || |||||||| |||||||||||| | |||||||||||    | | ||||||| |    
T  15142110 aagaagaaagatgggaaagccatgttcttcatgcatcagagtgtgagcaatgagatatttgagaagatcgtgcattatgaaagtgcaaaggaggagactt 15142011  T
Q  115 gggatgcattggagaaattgcattctggggatggtaagttgaagaagatgagacttcaagctttgagaagacaatatgaggtattgacaatggaagaaga 214  Q
    |||| |||||||| || ||  ||||||| |||||||| ||||||||| |||| ||||||| |||||||||||| ||||| || ||||| ||||| |||||    
T  15142010 gggaagcattggaaaagttatattctggagatggtaaattgaagaaggtgaggcttcaagttttgagaagacagtatgaagttttgactatggaggaaga 15141911  T
Q  215 agaaacagttagtcaatactttga 238  Q
    ||||||  | ||||||||||||||    
T  15141910 agaaaccataagtcaatactttga 15141887  T

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