View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_92 (Length: 304)
Name: NF6868A_low_92
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 2466653 - 2466930
Alignment:
| Q |
1 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466653 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
2466752 |
T |
|
| Q |
101 |
atgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaataaa |
200 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2466753 |
---ttggtgaaaagccatactaagtg----------------tttcactttaagctata--tagaaaccataccatatgatggataaataaataaataaa |
2466831 |
T |
|
| Q |
201 |
tggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatacgacatttctcgtattattggagtataataaaataatgt |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
2466832 |
tggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgatatttctcatattattggagtataataaaataatgt |
2466930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2462605 - 2462832
Alignment:
| Q |
1 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462605 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
2462704 |
T |
|
| Q |
101 |
atgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaataaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462705 |
atgttggtgaaaagccatactaag----------------tgtttcactttaagc--tatatagaaaccataccatatgatggataaataaataaataaa |
2462786 |
T |
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| Q |
201 |
tggcagggtaaacgtacgtacgtaatgagttcctgactcattatat |
246 |
Q |
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| |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462787 |
ttgcagggtaaacgtatgtacgtaatgagttcttgactcattatat |
2462832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 3063392 - 3063274
Alignment:
| Q |
1 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063392 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
3063293 |
T |
|
| Q |
101 |
atgttggtgaaaagccata |
119 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
3063292 |
atgttggtgaaaagccata |
3063274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2458029 - 2458154
Alignment:
| Q |
1 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
100 |
Q |
| |
|
||||||||||||||| || | ||| |||||||||||||||| |||||| |||||| |||| |||||||||| ||||||||||| ||||||||||||| |
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| T |
2458029 |
gttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgt---aataatggaggcacattcattatttgcaattacgatccaccaggcaact |
2458125 |
T |
|
| Q |
101 |
atgttggtgaaaagccatactaagtgcat |
129 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
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| T |
2458126 |
atgttggtcaaaagccatactaagtgcat |
2458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 2469981 - 2470100
Alignment:
| Q |
4 |
gtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatg |
103 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2469981 |
gtttggagaaacacacaacggattggatgtgccaaagtgaaatgt---aataacggaggaacattcattacttgcaattacgacccaccaggcaactata |
2470077 |
T |
|
| Q |
104 |
ttggtgaaaagccatactaagtg |
126 |
Q |
| |
|
|||| |||| |||||||||||| |
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| T |
2470078 |
ttggcgaaagaccatactaagtg |
2470100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 2474252 - 2474368
Alignment:
| Q |
4 |
gtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaactatg |
103 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| || ||||||||| |
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| T |
2474252 |
gtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgacccccctggcaactata |
2474348 |
T |
|
| Q |
104 |
ttggtgaaaagccatactaa |
123 |
Q |
| |
|
|||| |||| ||||||||| |
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|
| T |
2474349 |
ttggcgaaagaccatactaa |
2474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
16 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
92 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2486523 - 2486576
Alignment:
| Q |
1 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
54 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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|
| T |
2486523 |
gttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18015928 - 18016046
Alignment:
| Q |
1 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015928 |
gttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggcaact |
18016027 |
T |
|
| Q |
101 |
atgttggtgaaaagccata |
119 |
Q |
| |
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||||||||||||||||||| |
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| T |
18016028 |
atgttggtgaaaagccata |
18016046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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