View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6868A_low_95 (Length: 301)
Name: NF6868A_low_95
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6868A_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 819019 - 818725
Alignment:
| Q |
1 |
tcatggaattttattgttgtactcctctctactttgatatttcaaggaaagtattgctggaagcttcattctttgttggatttcatgttgcattaggttc |
100 |
Q |
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|||| |||||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
819019 |
tcatcgaattttattgttgtactcctcactaatttgatacttcaaggaaaatattgctggaagcttcattctttgttggatttcttgttgcattaggttc |
818920 |
T |
|
| Q |
101 |
cttaagttcaactgagctatagaacaactggctgcagcttagtttccctcaacgagcttcctactcactattctttattgttatttat--accagtgttt |
198 |
Q |
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|||||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||| | |||||||||| |
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| T |
818919 |
cttaagttaaactgagctataaaaaaactggctgcagcttagtttccctcaacaagcttcctacttactattatttattattattttttcaccagtgttt |
818820 |
T |
|
| Q |
199 |
gtatggaggagcaccaaagggtcctcaactgaaagatattgaccgcggagcagatattgtggtagcaactcctggtcgcttgaatgatattcttg |
293 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
818819 |
gtatggaggagcaccaaagggtcctcaattgaaagatattgaccggggagcagatattgtggtagccactcctggtcgcttgaatgatattcttg |
818725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 30685843 - 30685730
Alignment:
| Q |
52 |
tattgctggaagcttcattctttgttggatttcatgttgcattaggttccttaagttcaactgagctatagaacaactggctgcagcttagtttccctca |
151 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| || |||||||||||||| |
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| T |
30685843 |
tattgccggaagattcattcttcattggatttcatgttgcaataggttctttaagttaaactgagctatagaaaaactggttgttgcttagtttccctcg |
30685744 |
T |
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| Q |
152 |
acgagcttcctact |
165 |
Q |
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||||||||||||| |
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| T |
30685743 |
tcgagcttcctact |
30685730 |
T |
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