View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6868A_low_97 (Length: 298)

Name: NF6868A_low_97
Description: NF6868A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6868A_low_97
NF6868A_low_97
[»] chr2 (1 HSPs)
chr2 (2-298)||(38737399-38737704)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 38737399 - 38737704
Alignment:
Q  2 ggctggtgacaaaagctagaaagcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtggtggtagcaacggcaagagttcccg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38737399 ggctggtgacaaaagctagaaagcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtggtggtagcaacggcaagagttcccg 38737498  T
Q  102 tagtggtcgaatgtctaggttggttgattatctcaaaaacttgaatgagaacactgatgaggtataagttc---------nnnnnnnnctctctctcttg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||    
T  38737499 tagtggtcgaatgtctaggttggttgattatctcaaaaacttgaatgagaacactgatgaggtataagttctttttttttttttttctctctctctcttg 38737598  T
Q  193 taatggaccaatgaaaaatgatactacgtattgcttctttattatacttgtattcttatttcagttcaatttaacaaatagataccgtcttttatttaca 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38737599 taatggaccaatgaaaaatgatactacgtattgcttctttattatacttgtattcttatttcagttcaatttaacaaatagatactgtcttttatttaca 38737698  T
Q  293 gtttga 298  Q
    ||||||    
T  38737699 gtttga 38737704  T

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