View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_high_6 (Length: 382)
Name: NF6869A_high_6
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 78 - 378
Target Start/End: Complemental strand, 4473942 - 4473642
Alignment:
| Q |
78 |
gaccaaatcatataatgtgttaattttcacaaatcgtagctagatcctattattacacatggaatatgaaaattttgtattagatgaatgttttattaat |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
4473942 |
gaccaaatcatataatgtgttaattttcacaaatcgtagctagatcctattgttacacatggaatatgaaaattaagtattcgatgaatgttttattaat |
4473843 |
T |
|
| Q |
178 |
caatggtcaaaattaattagttttatatttcatcttatacnnnnnnncatatagaatcagctcatgagttggacaatataatagactataatttagaatg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4473842 |
caatggtcaaaattaattagttttatatttcatcttatacaaaaaaacatatagaatcagctcatgagttggacaatataatagactataatttagaatg |
4473743 |
T |
|
| Q |
278 |
gatggatgaagaagttagatgatatttaatcaaaacaattttgacaattcattctttnnnnnnnntatatattggccattgatgtacatttgtgtagtca |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4473742 |
gatggatgaagaagttagatgatatttaatcaaaacaattttgacaattcattctttaaaaaaaatatatattggccattgatgtacatttgtgtagtca |
4473643 |
T |
|
| Q |
378 |
t |
378 |
Q |
| |
|
| |
|
|
| T |
4473642 |
t |
4473642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University