View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_10 (Length: 412)
Name: NF6869A_low_10
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 42591004 - 42590891
Alignment:
| Q |
201 |
caccagcttgtattacagttagaaattatctttaaccacactattccatagg-gaatgcccttcttcaattctgttatcaccactatgctcactacccaa |
299 |
Q |
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| T |
42591004 |
caccagcttgtattacggttagaaattatcttcaaccacactattccataggagaaggcccttcttcaattctgttatcaccactatgctcactacccaa |
42590905 |
T |
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| Q |
300 |
tatgattgccatta |
313 |
Q |
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|||| |||||||| |
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| T |
42590904 |
catgactgccatta |
42590891 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 42591288 - 42591181
Alignment:
| Q |
55 |
atagaaaaagtttcattgcaacgcaaatagtaagccaccgtttcaattcatgctacgacatttcaacataatgtctatagaatggtgttaaaacgatgta |
154 |
Q |
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||||||||||||||||| |||| |||||||||||| | |||| ||||||||||| | ||||||||| | ||| ||| ||||||||||||||||| || |
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| T |
42591288 |
atagaaaaagtttcatttcaacacaaatagtaagctattgtttgaattcatgctaggtcatttcaac--actgtgtatgtaatggtgttaaaacgatata |
42591191 |
T |
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| Q |
155 |
cacgaaacat |
164 |
Q |
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| T |
42591190 |
caagaaacat |
42591181 |
T |
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