View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_102 (Length: 245)
Name: NF6869A_low_102
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_102 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 35933546 - 35933333
Alignment:
| Q |
12 |
atggacatcagcatagatgcgttacttgagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaagca |
111 |
Q |
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| T |
35933546 |
atggacataagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaagca |
35933447 |
T |
|
| Q |
112 |
tttacgaattaaattcttaatttgcttgttttatttgaagataggtccttgaatttattacttactttcctcccttaattacagataacttgacagaggc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35933446 |
tttacgaattaaattcttaatttgcttgttttatttgaagataggtccttaaatttatt----actttcctcccttaattacagataacttgacagaggc |
35933351 |
T |
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| Q |
212 |
acttatgttcttgtcaca |
229 |
Q |
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|||||||||||||||||| |
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| T |
35933350 |
acttatgttcttgtcaca |
35933333 |
T |
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