View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_103 (Length: 245)
Name: NF6869A_low_103
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_103 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29090049 - 29089805
Alignment:
| Q |
1 |
gaggttgaatcgattttctcgttcgattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttct |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29090049 |
gaggttgaatcgattttctctttcaattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttct |
29089950 |
T |
|
| Q |
101 |
cagaattcgagtccgcaatcctgaaggactcttccaaatcgctggccaatttcggcggtattcattcccttacaatgcaaacaatgcaatatcttaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29089949 |
cagaattcgagtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaa |
29089850 |
T |
|
| Q |
201 |
gcttacagattacagcaacgtgctttctgaaatattcttcgacat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29089849 |
gcttacagattacagcaacgtgctttctgaaatattcttcgacat |
29089805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 29104306 - 29104066
Alignment:
| Q |
5 |
ttgaatcgattttctcgttcgattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcaga |
104 |
Q |
| |
|
||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||| ||||| || | | || | |||| ||||| || | | || |
|
|
| T |
29104306 |
ttgaatcaattttctcgtttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttgga |
29104207 |
T |
|
| Q |
105 |
attcgagtccgcaatcctgaaggactcttccaaatcgctggccaatttcggcggtattcattcccttacaatgcaaacaatgcaatatcttaccaagctt |
204 |
Q |
| |
|
||| ||||| |||| ||||||| ||||||||||| ||| ||||||||||| |||||||||| ||| | |||||||||| ||||| | | ||| |
|
|
| T |
29104206 |
atttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactctt |
29104107 |
T |
|
| Q |
205 |
acagattacagcaacgtgctttctgaaatattcttcgacat |
245 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
29104106 |
gcagattacagcaacgtgctctctgagatattctttgacat |
29104066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University