View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_105 (Length: 244)
Name: NF6869A_low_105
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4316530 - 4316299
Alignment:
| Q |
1 |
tgagttgttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4316530 |
tgagttcttgggacaatcacgtcctaaatggggattatattcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
4316431 |
T |
|
| Q |
101 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcaccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4316430 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcgccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
4316331 |
T |
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| Q |
201 |
attccatacaaaggtgctgttgtacttgatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4316330 |
attccatacaaaggtgctgttgtacttgatgt |
4316299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5935940 - 5936171
Alignment:
| Q |
1 |
tgagttgttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5935940 |
tgagttcttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
5936039 |
T |
|
| Q |
101 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcaccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5936040 |
taaacaagggtctatttcaaagattcgtcatgttgttaaatgggttaaatcctcgctatctagattggaaaagttcatgagatgtgcttctgatgagaaa |
5936139 |
T |
|
| Q |
201 |
attccatacaaaggtgctgttgtacttgatgt |
232 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
5936140 |
attccatacaaaggtgttgttgtacttgatgt |
5936171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5933524 - 5933293
Alignment:
| Q |
1 |
tgagttgttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
5933524 |
tgagttattgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacacatgtagtaaaccttattgtgaaatctggcttgaaggagga |
5933425 |
T |
|
| Q |
101 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcaccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
5933424 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggttaaatcctcgccatctagattggaaaagtttatgagatgtgcttctgatgagaaa |
5933325 |
T |
|
| Q |
201 |
attccatacaaaggtgctgttgtacttgatgt |
232 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |
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| T |
5933324 |
attccatacaaaggtgttgttgtacttgatgt |
5933293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 16046144 - 16046375
Alignment:
| Q |
1 |
tgagttgttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
100 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16046144 |
tgagttcttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtaaaatctggcttgaaggagga |
16046243 |
T |
|
| Q |
101 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcaccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16046244 |
taaacaagggtctatttcaaagattcgtcatgcagttaaatgggtcaaatcctcgccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
16046343 |
T |
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| Q |
201 |
attccatacaaaggtgctgttgtacttgatgt |
232 |
Q |
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||| |||||||||||| ||||||||||||||| |
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| T |
16046344 |
atttcatacaaaggtgttgttgtacttgatgt |
16046375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 29090235 - 29090465
Alignment:
| Q |
1 |
tgagttgttgggacaatcacgtcctaaatggggattatgttcacatgcggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgaaggagga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29090235 |
tgagttcttgggacaatcacgtcctaaatggggattatgttcacatgtggtgttgcacgcatgtattaaaccttattgtgaaatctggcttgagggagga |
29090334 |
T |
|
| Q |
101 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcaccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090335 |
taaacaagggtctatttcaaagattcgtcatgctgttaaatgggtcaaatcctcgccatctagattggaaaagttcatgatatgtgcttctgatgagaaa |
29090434 |
T |
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| Q |
201 |
attccatacaaaggtgctgttgtacttgatg |
231 |
Q |
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|||||||| ||||||| |||||||||||||| |
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|
| T |
29090435 |
attccataaaaaggtgttgttgtacttgatg |
29090465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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