View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_108 (Length: 242)
Name: NF6869A_low_108
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_108 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 38567284 - 38567070
Alignment:
| Q |
17 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567284 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
38567185 |
T |
|
| Q |
117 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567184 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
38567085 |
T |
|
| Q |
217 |
ttggacaaagtggaa |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38567084 |
ttggacaaagtggaa |
38567070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 38526162 - 38525945
Alignment:
| Q |
14 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38526162 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgag |
38526063 |
T |
|
| Q |
114 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| |
|
|
| T |
38526062 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcat |
38525963 |
T |
|
| Q |
214 |
tggttggacaaagtggaa |
231 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38525962 |
tggttggacaaagtggaa |
38525945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University