View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6869A_low_113 (Length: 240)
Name: NF6869A_low_113
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 24666844 - 24666621
Alignment:
| Q |
12 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
111 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24666844 |
ataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat |
24666745 |
T |
|
| Q |
112 |
ccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
211 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24666744 |
ctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
24666645 |
T |
|
| Q |
212 |
accaatttcttggtgttgataact |
235 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24666644 |
accaatttcttggtgttgataact |
24666621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 34941551 - 34941782
Alignment:
| Q |
5 |
gaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt |
104 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||| |||||| |
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| T |
34941551 |
gaagaaaataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatc |
34941650 |
T |
|
| Q |
105 |
tcttcatccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagt |
204 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
34941651 |
tcttcatcctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaat |
34941750 |
T |
|
| Q |
205 |
gacaggaa-ccaatttcttggtgttgataact |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
34941751 |
gacaggaacccaatttcttggtgttgataact |
34941782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 18363653 - 18363426
Alignment:
| Q |
4 |
cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat |
103 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
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|
| T |
18363653 |
cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat |
18363554 |
T |
|
| Q |
104 |
ttcttcatccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18363553 |
ttcttcatcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
18363458 |
T |
|
| Q |
204 |
tgacaggaaccaatttcttggtgttgataact |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
18363457 |
tgacatgaaccaatttcttggtgttgataact |
18363426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 36599275 - 36599502
Alignment:
| Q |
4 |
cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat |
103 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
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|
| T |
36599275 |
cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat |
36599374 |
T |
|
| Q |
104 |
ttcttcatccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36599375 |
ttcttcatcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
36599470 |
T |
|
| Q |
204 |
tgacaggaaccaatttcttggtgttgataact |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
36599471 |
tgacatgaaccaatttcttggtgttgataact |
36599502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
| Q |
113 |
cttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa |
188 |
Q |
| |
|
|||||||||||| ||||||| || |||| | | | ||||||| ||||||||||||||| ||| |||||||||||| |
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|
| T |
8752390 |
cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa |
8752465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
| Q |
116 |
ttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc |
214 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
26240735 |
ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc |
26240636 |
T |
|
| Q |
215 |
aatttcttggtgttgataact |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26240635 |
aatttcttggtgttgataact |
26240615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 26240870 - 26240779
Alignment:
| Q |
5 |
gaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct |
96 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
26240870 |
gaagaaaataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct |
26240779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 53242714 - 53242900
Alignment:
| Q |
4 |
cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattat |
101 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || | ||| |||| ||||||||| |
|
|
| T |
53242714 |
cgaagaaaataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattat |
53242813 |
T |
|
| Q |
102 |
atttcttcatccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa |
188 |
Q |
| |
|
|||| |||||||| |||||||| | | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
53242814 |
atttgttcatcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa |
53242900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
| Q |
60 |
agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaa |
159 |
Q |
| |
|
||||||| |||||||||| |||| ||| |||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
43479456 |
agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactct-----------taaatctagaagatgcttgcagaa |
43479368 |
T |
|
| Q |
160 |
aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga |
211 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||| | || ||||||| |||| |
|
|
| T |
43479367 |
aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga |
43479315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 19697413 - 19697568
Alignment:
| Q |
12 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
111 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| || |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19697413 |
atactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat |
19697511 |
T |
|
| Q |
112 |
ccttttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt |
175 |
Q |
| |
|
| ||||||||||| || | |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
19697512 |
cattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt |
19697568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 13265597 - 13265651
Alignment:
| Q |
12 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat |
66 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13265597 |
ataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat |
13265651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 32566563 - 32566463
Alignment:
| Q |
21 |
gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa |
120 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| ||||||||||||| || ||||||| |||| |||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
32566563 |
gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa |
32566467 |
T |
|
| Q |
121 |
ctcc |
124 |
Q |
| |
|
|||| |
|
|
| T |
32566466 |
ctcc |
32566463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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