View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_117 (Length: 235)
Name: NF6869A_low_117
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 3586706 - 3586885
Alignment:
| Q |
11 |
gacatgcttattcttcttaattgttcctgcattttctacgtgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttctta |
110 |
Q |
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| T |
3586706 |
gacatgcttattcttcttaactgttcccgcattttctacatgtttatcttaact-ttcccgcattttttatttgcctatatatataagttattcttctta |
3586804 |
T |
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| Q |
111 |
accgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
191 |
Q |
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| T |
3586805 |
accgttcccacatctcttcaacctagctgctgctgttgtcagacttttcagatctgcaggtactattttttaccgcatcta |
3586885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 9789750 - 9789580
Alignment:
| Q |
21 |
ttcttcttaattgttcctgcattttctacgtgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttccca |
120 |
Q |
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| T |
9789750 |
ttcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttccca |
9789651 |
T |
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| Q |
121 |
catctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgcatcta |
191 |
Q |
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| T |
9789650 |
catatcttcaacctagctgctgctgttgtcagacttttcagatctacaggtactatttttcactgcatcta |
9789580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 44504580 - 44504713
Alignment:
| Q |
32 |
tgttcctgcattttctacgtgcttatcttaactattcccgcattttttatttgtttatagatataagttatttttcttaaccgttcccacatctcttcaa |
131 |
Q |
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| T |
44504580 |
tgttcccgcattttctacatgtttatctcaactgttcccgcattttttatttgcctatatatataagttattcttcttaaccgttcccacatctcttcaa |
44504679 |
T |
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| Q |
132 |
cctagctgctgctgttgtcagacttctcagatct |
165 |
Q |
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| T |
44504680 |
cttagctgctgctgttgtcagacttttcagatct |
44504713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 31678513 - 31678617
Alignment:
| Q |
87 |
tatagatataagttatttttcttaaccgttcccacatctcttcaacctagctgctgctgttgtcagacttctcagatctgcaggtaatatttttcactgc |
186 |
Q |
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| T |
31678513 |
tatatatataagttattcttcttaaccgttcccacatcttttcaacctagctgctgctgttgtcagacttttcagatctacaggtacgatttttcaccgc |
31678612 |
T |
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| Q |
187 |
atcta |
191 |
Q |
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||||| |
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| T |
31678613 |
atcta |
31678617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 31678376 - 31678441
Alignment:
| Q |
11 |
gacatgcttattcttcttaattgttcctgcattttctacgtgcttatcttaactattcccgcattt |
76 |
Q |
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||||||||||| |||||||| |||||| ||||||||||| |||||||||||| | ||||||||||| |
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| T |
31678376 |
gacatgcttatgcttcttaactgttcccgcattttctacatgcttatcttaattgttcccgcattt |
31678441 |
T |
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