View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_118 (Length: 235)
Name: NF6869A_low_118
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_118 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 54609236 - 54609001
Alignment:
| Q |
1 |
atatgctggcaagaaacataagaataaatcccaaccattaatttaaatttcactgccc-atgcattccgccaaatacatattgtatccccaaccatgtgt |
99 |
Q |
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| T |
54609236 |
atatgctggcaagaaacacaagaataaatcccaaccattaatttaaatttcactgccccatgtattccgccaaatacatattgtatccccaaccatgtgt |
54609137 |
T |
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| Q |
100 |
ttaagatccttccacgcgtatattcttgcaattcttgcacatatccttcgtaacatatggcaatgccgacattcaatattgacatacgttttcatggttg |
199 |
Q |
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| T |
54609136 |
ttatgatccttgcacgtgtatattcttgcaattcttgcacatatccttcgtaacatatggcaatgccgacattcaatattgacatacgttttcatggttg |
54609037 |
T |
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| Q |
200 |
tactcgatctcttaatgtaattgagattatttaagt |
235 |
Q |
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| T |
54609036 |
tactcgatctcttaatgtaattgagattatttaagt |
54609001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 39047437 - 39047393
Alignment:
| Q |
118 |
tatattcttgcaattcttgcacatatccttcgtaacatatggcaa |
162 |
Q |
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| T |
39047437 |
tatattcttgcaattcttgcacacatccttggtaacatatagcaa |
39047393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 3462223 - 3462080
Alignment:
| Q |
8 |
ggcaagaaacataagaataaatcccaaccattaatttaaatttcactgccc-atgcattccgccaaatacatattgtatccccaaccatgtgtttaagat |
106 |
Q |
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| T |
3462223 |
ggcaagaaaaacaacaataaatcccaaccattaatttaaatctcactaccccatgtattccgccaaatacctattgtatcactaactatttgtttaagat |
3462124 |
T |
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| Q |
107 |
ccttccacgcgtatattcttgcaattcttgcacatatccttcgt |
150 |
Q |
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| T |
3462123 |
ctttccatgtatatgttcttacaattcttgcacatatctttcgt |
3462080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 19397048 - 19397191
Alignment:
| Q |
14 |
aaacataagaataaatcccaaccattaatttaaatttcactgccc-atgcattccgccaaatacatattgtatccccaaccatgtgtttaagatccttcc |
112 |
Q |
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| T |
19397048 |
aaacacaagaataaatcccacccattaacttaaatcccactaccccatgtattccgccaatatca-actgtatcaacaactatttgcttaagattcttcc |
19397146 |
T |
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| Q |
113 |
acgcgtatattcttgcaattcttgcacatatccttcgtaacatat |
157 |
Q |
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| T |
19397147 |
acgtgtatattcttgtaattcttgcacatattctttctaacatat |
19397191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 25368034 - 25367989
Alignment:
| Q |
117 |
gtatattcttgcaattcttgcacatatccttcgtaacatatggcaa |
162 |
Q |
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| T |
25368034 |
gtatattcttgcaattcttggacatatccttcgtaacatatagcaa |
25367989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25369073 - 25369027
Alignment:
| Q |
1 |
atatgctggcaagaaacataagaataaatcccaaccattaatttaaa |
47 |
Q |
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| T |
25369073 |
atatgcgggcaagaaacacaagaataaatcccagctattaatttaaa |
25369027 |
T |
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