View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6869A_low_119 (Length: 235)
Name: NF6869A_low_119
Description: NF6869A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6869A_low_119 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 7627529 - 7627372
Alignment:
| Q |
58 |
agaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaaggaagaa |
157 |
Q |
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| T |
7627529 |
agaagaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttcaagaagcaagaatgacacttcacaagaaaaaggaagaa |
7627430 |
T |
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| Q |
158 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggtttta |
215 |
Q |
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| T |
7627429 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagaactggagatggtggtttta |
7627372 |
T |
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Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 8921242 - 8921399
Alignment:
| Q |
58 |
agaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaaggaagaa |
157 |
Q |
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| T |
8921242 |
agaagaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacacttcacaagaaaaaggaagaa |
8921341 |
T |
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| Q |
158 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggtttta |
215 |
Q |
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| T |
8921342 |
gaacaactcttgaaggtgtcaaattcaagaagaggaagagctggagatggtggtttta |
8921399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 35372168 - 35372092
Alignment:
| Q |
58 |
agaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatga |
134 |
Q |
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| T |
35372168 |
agaagaatctaatgatgttaccactctttctattgatgaactgcaatgcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34899950 - 34899903
Alignment:
| Q |
1 |
caaactttaccgatatgcatataaacacatctcttgttagttcttctc |
48 |
Q |
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| T |
34899950 |
caaactttacctatatgcatataaacacatctctctttagttcttctc |
34899903 |
T |
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